Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14n08
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 35 0.011
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe... 31 0.23
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 29 0.94
SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|c... 28 1.2
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 28 1.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.0
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 26 6.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 8.7
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 35.1 bits (77), Expect = 0.011
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = -2
Query: 480 LRQYDYKK-FEWLLEKLNIEYKGNPESFHKLSRRESLRKLTELHCDDIRNSKLAGYKNLL 304
+ YD +K F+W L L + + E F+ L R S KLT L DDI +L + +L
Sbjct: 319 ISDYDPRKGFKWKLSSLK---ERSAEIFNTLGERNSSSKLTNLTEDDI---ELFYWSSLA 372
Query: 303 ESQQGPFLKQKLEALKFIRSEQTELQLP 220
ES G F +LE L + + LP
Sbjct: 373 ESNSG-FAPLELEGLSQAYTSTIQSSLP 399
>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 30.7 bits (66), Expect = 0.23
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = -2
Query: 498 KKLLKYLRQYDYKKFEWLLEKLNIEYKGNPESFHKLSRRESLRKLTELHCDDIRNS 331
K +Y++QY+ + + LL + I + + + FHK +++ K +L C ++ N+
Sbjct: 3 KSRFEYVKQYE--RLDRLLPETYIVIRIDGKGFHKFTKKHDFEKPNDLRCLNLMNA 56
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 28.7 bits (61), Expect = 0.94
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = -2
Query: 468 DYKKFEWLLEKLNIEYKGNPESFHKLSRRESLRK--LTELHCDDIRNSKLAGYKNLLESQ 295
+Y+K E L+ L K +FH+L + L++ LT L I + LL
Sbjct: 695 EYEKLETQLKDL----KTQNANFHRLEQEIQLKQHELTLL----IEQRETDSSFRLLSDY 746
Query: 294 QGPFLKQKLEALKFIRSEQTELQLPVTVTEQAIKAVEKQLEEW 166
Q Q + +K ++ EL + ++QAIK +E+ ++EW
Sbjct: 747 Q-----QYKDDVKDLKQRLPELDRLILQSDQAIKKIERDMQEW 784
>SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 134
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = -2
Query: 672 LVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNIMEKNPRNSKMKQT 523
L+ E+ RV +ENS KI + ++ +++++E P N+++++T
Sbjct: 46 LLAGEIYGRVCFWLKEENSQHPKIKKAHRHLEQLKSLLESLPTNNELEET 95
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = -2
Query: 414 NPESFHKLSRRESLRKLTELHCDDIRNSKLAGYKNLLESQQGPFLKQKLEALKFIRSEQT 235
N FH +R+ + +T +DI+ + K + +S++ P ++ EA I +Q
Sbjct: 241 NERKFHAKTRKTPSKPVTNNEDEDIKRAIELSLKEMPQSREPPSYERPSEANVVISQDQ- 299
Query: 234 ELQLPVTVTEQAIKAVEKQLEE 169
L E+ +A+ LEE
Sbjct: 300 --HLTEDEDEELKRAIAISLEE 319
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 5.0
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Frame = -2
Query: 558 EKNPRNSKMKQTVQEMIDRRKKLLKYLRQYD---------YKKFEWLLEKLNIEYKGNPE 406
E R +K+ +M+ + + +KYL +YD +K E +I N E
Sbjct: 1181 EAKERIRNIKKLKTDMLTKLENTVKYLCEYDSIDKVRNSFFKNLNSFYEMYSIAKAENEE 1240
Query: 405 SFHKLSRRESLRKLTELHCDDIRNSKLAGYKNLLE 301
F K RR +L + S +A Y+N E
Sbjct: 1241 RFEKEKRRIMSEDRDKLIRGRQKTSIVAKYRNKRE 1275
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 6.6
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -2
Query: 492 LLKYLRQYDYKKFEWLLEKLNIEYKGNPESFHKLSRRESLRKLTEL-HCDDIRNSKLAGY 316
+LKYL YK LEKL ++ K N F L+++ EL D +N ++ +
Sbjct: 628 VLKYLETISYKVSIIYLEKLLLDNKFNDTVFPTRLALLYLKRILELEETTDFKNQEV--F 685
Query: 315 KNLLE 301
K +E
Sbjct: 686 KQTIE 690
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 8.7
Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 19/152 (12%)
Frame = -2
Query: 627 DENSAENKIARLTAYIRCIQNIMEKNPRNSK----MKQTVQEMIDRRKKL---LKYLR-- 475
+E+ + + +LTA I N+ E+N S+ +K + E + + KL +++L+
Sbjct: 939 EESKSSDLGKKLTARQEEISNLKEENMSQSQAITSVKSKLDETLSKSSKLEADIEHLKNK 998
Query: 474 --QYDYKKFEWLL--EKLNIEYKGNPESFHKLSRRESLRKLTELHCDDIRNSKL----AG 319
+ + ++ L E+L + K N E+ L + E +K E DD++ SKL +
Sbjct: 999 VSEVEVERNALLASNERLMDDLKNNGENIASL-QTEIEKKRAE--NDDLQ-SKLSVVSSE 1054
Query: 318 YKNLL--ESQQGPFLKQKLEALKFIRSEQTEL 229
Y+NLL SQ L+ K LK+I +L
Sbjct: 1055 YENLLLISSQTNKSLEDKTNQLKYIEKNVQKL 1086
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,890
Number of Sequences: 5004
Number of extensions: 48867
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -