Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14n08
(751 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 24 1.8
AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly pro... 23 3.1
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 23 4.0
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 22 5.3
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 22 5.3
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 22 5.3
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 21 9.3
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 21 9.3
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 21 9.3
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 21 9.3
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 21 9.3
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 21 9.3
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 21 9.3
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 21 9.3
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.8 bits (49), Expect = 1.8
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = -2
Query: 555 KNPRNSKMKQTVQEMIDRRKKLLKYLRQYDYKKFEWLLEKLNI-----EYKGNPESFHK 394
+ PR +M Q ++++ + + +R+ + W++E N+ Y G+P K
Sbjct: 323 RGPRTHRMPQLIRKIFLKYLPTILMMRRPKKTRLRWMMEIPNVTLPTSTYSGSPTELPK 381
>AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly
protein MRJP6 protein.
Length = 437
Score = 23.0 bits (47), Expect = 3.1
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = -2
Query: 489 LKYLRQYDYKKFEWLLEKLNIEYKGNPESFHKLSRRESLRKLTELHCDDIRNSKLAGYK- 313
L Y+ + K ++ E+ NIEY+G + F+ S + + K L + NS + +
Sbjct: 276 LYYVNMEPFMKSQY--EENNIEYEGIQDIFNTQSSAKVMSKNGVLFFGLVNNSAIGCWNE 333
Query: 312 -NLLESQQGPFLKQKLEALKFIRS 244
L+ Q + Q + L+ I S
Sbjct: 334 HQPLQRQNMDMVAQNEKTLQMIIS 357
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 22.6 bits (46), Expect = 4.0
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +3
Query: 273 FVLKMALAGFLVNFC---SLLIYCF 338
FV+ +A++ FL+ FC ++I C+
Sbjct: 90 FVINLAISNFLMMFCMSPPMVINCY 114
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 22.2 bits (45), Expect = 5.3
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -2
Query: 516 EMIDRRKK---LLKYLRQYDYKKFEWLLEKLNIEYKGNPESF 400
+ + ++KK LL Y+RQ D EW N + + N + +
Sbjct: 31 DFLHKQKKIFDLLLYVRQADLSDAEWYDVGRNYDMESNMDMY 72
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 22.2 bits (45), Expect = 5.3
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -2
Query: 516 EMIDRRKK---LLKYLRQYDYKKFEWLLEKLNIEYKGNPESF 400
+ + ++KK LL Y+RQ D EW N + + N + +
Sbjct: 31 DFLHKQKKIFDLLLYVRQADLSDAEWYDVGRNYDMESNMDMY 72
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 22.2 bits (45), Expect = 5.3
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +3
Query: 273 FVLKMALAGFLVNFC---SLLIYCF 338
FV+ +A++ FL+ FC ++I C+
Sbjct: 56 FVINLAISDFLMMFCMSPPMVINCY 80
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 434 SILSTKGILSHFTNYHEENHYAN 366
S LS S++ NY+ N+Y N
Sbjct: 83 SSLSNNYNYSNYNNYNNNNNYNN 105
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 434 SILSTKGILSHFTNYHEENHYAN 366
S LS S++ NY+ N+Y N
Sbjct: 83 SSLSNNYNYSNYNNYNNNNNYNN 105
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 434 SILSTKGILSHFTNYHEENHYAN 366
S LS S++ NY+ N+Y N
Sbjct: 83 SSLSNNYNYSNYNNYNNNNNYNN 105
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 434 SILSTKGILSHFTNYHEENHYAN 366
S LS S++ NY+ N+Y N
Sbjct: 83 SSLSNNYNYSNYNNYNNNNNYNN 105
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 434 SILSTKGILSHFTNYHEENHYAN 366
S LS S++ NY+ N+Y N
Sbjct: 83 SSLSNNYNYSNYNNYNNNNNYNN 105
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 434 SILSTKGILSHFTNYHEENHYAN 366
S LS S++ NY+ N+Y N
Sbjct: 83 SSLSNNYNYSNYNNYNNNNNYNN 105
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 434 SILSTKGILSHFTNYHEENHYAN 366
S LS S++ NY+ N+Y N
Sbjct: 83 SSLSNNYNYSNYNNYNNNNNYNN 105
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 434 SILSTKGILSHFTNYHEENHYAN 366
S LS S++ NY+ N+Y N
Sbjct: 83 SSLSNNYNYSNYNNYNNNNNYNN 105
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,758
Number of Sequences: 438
Number of extensions: 3503
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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