Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14n06
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 29 0.28
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 1.1
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 26 3.5
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 26 3.5
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 4.6
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 4.6
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 25 6.1
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom... 25 6.1
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 8.1
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 8.1
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 25 8.1
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 29.5 bits (63), Expect = 0.28
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 312 AWV*RNTSFNFVWIIHFTIY 371
+W T+FN +W+IHFT Y
Sbjct: 478 SWFHLVTNFNRIWVIHFTTY 497
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.5 bits (58), Expect = 1.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 312 AWV*RNTSFNFVWIIHFTIYLCF*RFLIKTYLIVTVSYYQK 434
+W T+FN +W+IHF ++ F F T + T ++Q+
Sbjct: 508 SWFHLITNFNRIWVIHFGMFWYFTAFNSPT--LYTKPFHQR 546
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 320 YPGFPELARSDVSIYPSYTKLGLAYR 243
+ F R D + P+YT LGL YR
Sbjct: 561 FSAFVSSLRKDPNYAPAYTSLGLYYR 586
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 3.5
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = +1
Query: 304 SGKPGYSGTRLLISSGLFILQFICVFNGFLSKHI 405
S ++ LL+++ L + +F+C+ N F +H+
Sbjct: 929 SNHKSHNNQSLLLAASLTLSKFMCLSNNFCMEHL 962
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.4 bits (53), Expect = 4.6
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -1
Query: 188 MKELHSFEKLQANA-LDGVRVHREFSQGILSHVIPPRRYMQKLT 60
+KE++ + NA L+ V FS+G+L V+PP++ + ++
Sbjct: 1185 LKEMYQIITMGGNAELELVDSLDPFSEGVLFSVMPPKKSWKNIS 1228
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 4.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 362 YNLFVFLTVSYQNISNSDC 418
YN+ FL+V++QN DC
Sbjct: 524 YNMLFFLSVNFQNPGLKDC 542
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 332 RVPLYPGFPELARSDVSI 279
R PLYPG PE++ SI
Sbjct: 81 RQPLYPGIPEISEEIESI 98
>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 251 AYRVVCRHRYHWAKVAQRKQFMKELHSFEKLQANALDGVR-VHREFSQGILSH 96
A ++ + HW RKQ++K H+ + ++ + + E SQ + ++
Sbjct: 222 ALDIIAQCHQHWKVSRDRKQYIKNFHNESVNNVDLINKINSLKEEVSQNVSNY 274
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 422 AYSHY*ICFDKKPLKTQINCKMNN-PDEIKRRVP 324
+YS C D + +NCK++N PD+ +++ P
Sbjct: 144 SYSGICDCGDPEAWNVDLNCKIHNVPDDEEQKKP 177
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 8.1
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = -1
Query: 173 SFEKLQAN----ALDGVRVHREFSQGILSHVIPPRRYMQKLTTDPLTP 42
SF+++Q A DG R+ +L H IPP KL +D P
Sbjct: 341 SFDRMQTALRLFATDGSRLSSFLYHKLLGHDIPPSFLKPKLPSDLSVP 388
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 24.6 bits (51), Expect = 8.1
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = -1
Query: 287 VSIYPSYTKLGLAYRVVCRHRYHWAKVAQRKQFMKELHSFEKL 159
V +YP++TK + V C + + ++ + ++ ++ +F+KL
Sbjct: 58 VDVYPNFTKKPITKVVSCATQDIFYALSDSQVYVYQISTFKKL 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,425
Number of Sequences: 5004
Number of extensions: 46148
Number of successful extensions: 114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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