Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14n06
(488 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC121000-1|AAI21001.1| 366|Homo sapiens tuberous sclerosis 1 pr... 32 0.93
BC108668-1|AAI08669.1| 477|Homo sapiens TSC1 protein protein. 32 0.93
BC070032-1|AAH70032.1| 366|Homo sapiens tuberous sclerosis 1 pr... 32 0.93
BC047772-1|AAH47772.1| 366|Homo sapiens tuberous sclerosis 1 pr... 32 0.93
AL445645-4|CAH72112.1| 1164|Homo sapiens tuberous sclerosis 1 pr... 32 0.93
AF013168-1|AAC51674.1| 1164|Homo sapiens hamartin protein. 32 0.93
AB190910-1|BAD91314.1| 454|Homo sapiens tumor suppressor protein. 32 0.93
BC004213-1|AAH04213.1| 223|Homo sapiens proteasome (prosome, ma... 31 2.1
BC004184-1|AAH04184.1| 223|Homo sapiens proteasome (prosome, ma... 31 2.1
BC002383-1|AAH02383.1| 223|Homo sapiens proteasome (prosome, ma... 31 2.1
AB003177-1|BAA19790.1| 209|Homo sapiens proteasome subunit p27 ... 31 2.1
AL603750-1|CAH72669.1| 1116|Homo sapiens synapse defective 1, Rh... 30 4.9
>BC121000-1|AAI21001.1| 366|Homo sapiens tuberous sclerosis 1
protein.
Length = 366
Score = 32.3 bits (70), Expect = 0.93
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 188 MKE-LHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKLTTD 54
MKE L +FE++ ++ VR+H E G H + PRR+ + T D
Sbjct: 209 MKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKRLETHD 254
>BC108668-1|AAI08669.1| 477|Homo sapiens TSC1 protein protein.
Length = 477
Score = 32.3 bits (70), Expect = 0.93
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 188 MKE-LHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKLTTD 54
MKE L +FE++ ++ VR+H E G H + PRR+ + T D
Sbjct: 209 MKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKRLETHD 254
>BC070032-1|AAH70032.1| 366|Homo sapiens tuberous sclerosis 1
protein.
Length = 366
Score = 32.3 bits (70), Expect = 0.93
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 188 MKE-LHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKLTTD 54
MKE L +FE++ ++ VR+H E G H + PRR+ + T D
Sbjct: 209 MKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKRLETHD 254
>BC047772-1|AAH47772.1| 366|Homo sapiens tuberous sclerosis 1
protein.
Length = 366
Score = 32.3 bits (70), Expect = 0.93
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 188 MKE-LHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKLTTD 54
MKE L +FE++ ++ VR+H E G H + PRR+ + T D
Sbjct: 209 MKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKRLETHD 254
>AL445645-4|CAH72112.1| 1164|Homo sapiens tuberous sclerosis 1
protein.
Length = 1164
Score = 32.3 bits (70), Expect = 0.93
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 188 MKE-LHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKLTTD 54
MKE L +FE++ ++ VR+H E G H + PRR+ + T D
Sbjct: 209 MKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKRLETHD 254
>AF013168-1|AAC51674.1| 1164|Homo sapiens hamartin protein.
Length = 1164
Score = 32.3 bits (70), Expect = 0.93
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 188 MKE-LHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKLTTD 54
MKE L +FE++ ++ VR+H E G H + PRR+ + T D
Sbjct: 209 MKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKRLETHD 254
>AB190910-1|BAD91314.1| 454|Homo sapiens tumor suppressor protein.
Length = 454
Score = 32.3 bits (70), Expect = 0.93
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 188 MKE-LHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKLTTD 54
MKE L +FE++ ++ VR+H E G H + PRR+ + T D
Sbjct: 209 MKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKRLETHD 254
>BC004213-1|AAH04213.1| 223|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 9 protein.
Length = 223
Score = 31.1 bits (67), Expect = 2.1
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = -1
Query: 314 GFPELARSDVSIYPSYTKLGLAYRVVCRHRYHWAKVAQRKQFMKELHSFEKLQANALDGV 135
G+P RSDV +Y T + ++C H A + Q ++ + +LH+ +K + A D
Sbjct: 61 GYP---RSDVDLYQVRTA---RHNIICLQNDHKAVMKQVEEALHQLHARDK-EKQARDMA 113
Query: 134 RVHREFSQ---GILSHVIPPRRYMQKLTTDPLTP 42
H+E G PPR + + + P +P
Sbjct: 114 EAHKEAMSRKLGQSESQGPPRAFAKVNSISPGSP 147
>BC004184-1|AAH04184.1| 223|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 9 protein.
Length = 223
Score = 31.1 bits (67), Expect = 2.1
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = -1
Query: 314 GFPELARSDVSIYPSYTKLGLAYRVVCRHRYHWAKVAQRKQFMKELHSFEKLQANALDGV 135
G+P RSDV +Y T + ++C H A + Q ++ + +LH+ +K + A D
Sbjct: 61 GYP---RSDVDLYQVRTA---RHNIICLQNDHKAVMKQVEEALHQLHARDK-EKQARDMA 113
Query: 134 RVHREFSQ---GILSHVIPPRRYMQKLTTDPLTP 42
H+E G PPR + + + P +P
Sbjct: 114 EAHKEAMSRKLGQSESQGPPRAFAKVNSISPGSP 147
>BC002383-1|AAH02383.1| 223|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 9 protein.
Length = 223
Score = 31.1 bits (67), Expect = 2.1
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = -1
Query: 314 GFPELARSDVSIYPSYTKLGLAYRVVCRHRYHWAKVAQRKQFMKELHSFEKLQANALDGV 135
G+P RSDV +Y T + ++C H A + Q ++ + +LH+ +K + A D
Sbjct: 61 GYP---RSDVDLYQVRTA---RHNIICLQNDHKAVMKQVEEALHQLHARDK-EKQARDMA 113
Query: 134 RVHREFSQ---GILSHVIPPRRYMQKLTTDPLTP 42
H+E G PPR + + + P +P
Sbjct: 114 EAHKEAMSRKLGQSESQGPPRAFAKVNSISPGSP 147
>AB003177-1|BAA19790.1| 209|Homo sapiens proteasome subunit p27
protein.
Length = 209
Score = 31.1 bits (67), Expect = 2.1
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = -1
Query: 314 GFPELARSDVSIYPSYTKLGLAYRVVCRHRYHWAKVAQRKQFMKELHSFEKLQANALDGV 135
G+P RSDV +Y T + ++C H A + Q ++ + +LH+ +K + A D
Sbjct: 61 GYP---RSDVDLYQVRTA---RHNIICLQNDHKAVMKQVEEALHQLHARDK-EKQARDMA 113
Query: 134 RVHREFSQ---GILSHVIPPRRYMQKLTTDPLTP 42
H+E G PPR + + + P +P
Sbjct: 114 EAHKEAMSRKLGQSESQGPPRAFAKVNSISPGSP 147
>AL603750-1|CAH72669.1| 1116|Homo sapiens synapse defective 1, Rho
GTPase, homolog 2 (C. elegans) protein.
Length = 1116
Score = 29.9 bits (64), Expect = 4.9
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Frame = -1
Query: 392 KKPLKTQINCKMNNPDEIKRRVPLYPGFPELARSDVSIYPSYTKLGLAY----RVVCRHR 225
K PLK N N+P + K V L PE+ ++ + + + KL +Y ++ C++
Sbjct: 841 KSPLKMSSNGCENDPGDSKYTVDLLDCLPEIEKATLKMLLDHLKLVASYHEVNKMTCQNL 900
Query: 224 ---YHWAKVAQRKQ---FMKELHSFEKLQANALDGVRVHREFSQGILSHVIPPRRYMQKL 63
+ ++QR++ + + + A+ALD + H E +L + P +R K
Sbjct: 901 AVCFGPVLLSQRQEPSTHNNRVFTDSEELASALD-FKKHIEVLHYLL-QLWPVQRLTVKK 958
Query: 62 TTDPLTPKER 33
+TD L P+++
Sbjct: 959 STDNLFPEQK 968
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,722,254
Number of Sequences: 237096
Number of extensions: 1623499
Number of successful extensions: 2711
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2711
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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