Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14n04
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos...    60   3e-10
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    26   4.4  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   5.8  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   7.7  

>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
           Coq4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 25/76 (32%), Positives = 43/76 (56%)
 Frame = -3

Query: 355 QVTVKWVEGIQTKLPMCIGGGIWGAARLRPKHRQMYLKYYLPWAIRTGNNAKFLQGIYFE 176
           ++ +KW+E +   LP+     ++G  RL  +    + + Y+PW+IR G NAK L  +Y+E
Sbjct: 190 ELAIKWLEFVNMGLPVGALSALFGPLRLNCEQASRFRRVYIPWSIRNGLNAKTLINVYWE 249

Query: 175 KRWEQDIDDFHKEMNI 128
           K    DI+D  + + I
Sbjct: 250 KELTNDIEDVRRRIRI 265


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 15  ALQRATSVSWFASYRSVCK-VYYWNIV 92
           A ++ TS SW+ +Y   CK V+  N+V
Sbjct: 281 AARKTTSQSWYVTYNPACKRVFNINLV 307


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 469 NFVLSDFFLDSFIKSNPDFSLSLSCV 546
           +F +S F  DSFI+SNP  S   + V
Sbjct: 417 DFDMSPFIDDSFIQSNPKISTKYNLV 442


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -3

Query: 634 LLLCHVLFEIITKLFEIKIRMKLQILN 554
           +LLC  L+ ++T  F+I ++ +L +++
Sbjct: 289 VLLCFFLYSLLTPFFDIHLQFQLIVMH 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,898
Number of Sequences: 5004
Number of extensions: 48743
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)