Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14m24
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    27   2.3  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   5.4  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   5.4  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   7.1  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    26   7.1  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.4  

>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 127 ASFLTFSIT*KLTQICMELERLPLGDLLP 41
           A+ +TFSI  K+   C +L+++ L DL+P
Sbjct: 269 ATPITFSIASKILSCCKKLKQVELVDLIP 297


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 661  RFIGCYHVRNIVELYNFFGDRREERLEG 578
            +F  C H  +I+EL +FF DR+  R EG
Sbjct: 967  KFFHCDH--DIMELVDFFNDRKFFRQEG 992


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 420 VILEGC*LSRKYVYYKQLDRIPPKRFPSRQV 512
           +IL    L R+Y + ++L++I  K FP + +
Sbjct: 62  IILNDSGLERRYAFVQKLEQILKKEFPYKNI 92


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -3

Query: 666  FIDL*DVITSETLLNCIIFLAIDEKSVSRVASRYFKEIRKVRLIS 532
            ++D+ DV+      N I+F+  D KS +    R FKE R +++++
Sbjct: 1213 WLDVLDVLHKSFEANGIVFIRFDGKSKNTCLKR-FKEERSLQVLT 1256


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 148 LAACKLSASFLTFSIT*KLTQI 83
           L  C +S SFLTF++  KLT +
Sbjct: 490 LGTCIVSVSFLTFTVYAKLTNL 511


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 291 RLILKQNNGVILFKNFSSYYHYVSNVYKYIFILFGTAFRCKLT 163
           R  L + +  ++ K    YY  V  V    F LF  AFR  +T
Sbjct: 250 RSSLSRTSSPVVEKKLKRYYIRVLLVQSITFFLFNDAFRNSIT 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,937
Number of Sequences: 5004
Number of extensions: 59193
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)