Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14m24
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0430 - 28923784-28923830,28923931-28924341,28924552-289249...    29   3.2  
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089...    29   4.2  
03_02_0708 + 10577931-10579511,10579613-10579706,10580694-105808...    29   5.6  

>02_05_0430 -
           28923784-28923830,28923931-28924341,28924552-28924963,
           28925000-28925542,28925790-28925884,28926003-28927033,
           28927304-28927452,28927483-28927523,28927594-28928206
          Length = 1113

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +2

Query: 605 AKKIIQFNNVSDVITSYKSMNTGCT-HEKVSRS 700
           AK+  + NNV D +TSYK+++T  + H +V+ S
Sbjct: 113 AKRKAESNNVPDEVTSYKTIHTPTSCHSQVTES 145


>10_08_0190 +
           15607241-15607409,15607932-15607990,15608883-15608991,
           15609394-15609551,15609976-15610044,15610158-15610847,
           15611112-15611629,15611725-15611789,15613010-15613089,
           15613894-15613998,15614768-15614881,15615029-15615168,
           15615257-15615385,15615903-15616055,15616186-15616327
          Length = 899

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 547 SQTNFSRYDNSITCLLGNLLGGMRSNCL*YTYFLD 443
           + T +SR DNSITC + N    +R   + + YFLD
Sbjct: 274 NSTTYSRMDNSITCAISNGSLCLRQGDMKF-YFLD 307


>03_02_0708 +
           10577931-10579511,10579613-10579706,10580694-10580856,
           10581286-10581491,10581854-10582062
          Length = 750

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 749 DCASLSSALAYTLRLRRNVTLFRACSRCSSIYRMLSRQKH 630
           D  S+    A+    R  V L +AC++CS+IY ++    H
Sbjct: 38  DYNSMLRFTAFCPDYRTYVLLLKACAKCSNIYAIMEIHSH 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,300,018
Number of Sequences: 37544
Number of extensions: 322581
Number of successful extensions: 587
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)