Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14m17
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.52 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.52 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.5  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 345 GAGRGLVALKLLDANVEGADLLDLAGEHVPG 437
           G GR +  ++ L+   EGA  ++L  E++PG
Sbjct: 232 GWGRQIKLVEGLEEEAEGAITVELQSENIPG 262


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 345 GAGRGLVALKLLDANVEGADLLDLAGEHVPG 437
           G GR +  ++ L+   EGA  ++L  E++PG
Sbjct: 322 GWGRQIKLVEGLEEEAEGAITVELQSENIPG 352


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 463  YMPTPPGVPVRIRSPGTRV 519
            YMP+ P  P+ +  PGT +
Sbjct: 959  YMPSEPKAPMILVGPGTGI 977


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 479 GGVGMYRQPPEYL-QPGDVLTSEIEKIGAFDVR 384
           GG+G+ R PP+ + +P  VL +  +  G ++VR
Sbjct: 96  GGIGVLRLPPDKVWKPDIVLFNNAD--GNYEVR 126


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 469 PTPPGVPVRIRSPGT 513
           PTPP VPV     GT
Sbjct: 52  PTPPSVPVGSAVAGT 66


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 265 NYHSVQRWYYNII 303
           NY++ ++ YYNII
Sbjct: 345 NYNNYKKLYYNII 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,736
Number of Sequences: 438
Number of extensions: 3532
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)