Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14m16
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0316 + 33091194-33091370,33091451-33092155                       29   3.9  
03_01_0271 + 2097027-2098583                                           29   5.1  
11_04_0097 + 13448740-13450725                                         28   6.7  
08_02_0259 - 14974526-14974572,14974670-14974742,14974829-149748...    28   6.7  
05_03_0035 - 7592177-7592938                                           28   6.7  

>03_06_0316 + 33091194-33091370,33091451-33092155
          Length = 293

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/72 (29%), Positives = 27/72 (37%)
 Frame = -1

Query: 397 AQEKAKLKAMAKEQXXXXXXXXXXXXKTGTAESKDAIKSDKKPEMQAGSQQVKKVEAKPQ 218
           A+ K K KA AK +                A+ K A K   KP+  A  +   K  AKP+
Sbjct: 140 AKPKPKPKAAAKPKAAAKPKAKAPAKSKAAAKPKAAAKPAAKPKAAAKPKSPAKPAAKPK 199

Query: 217 QQPAKKVDTNVK 182
             P  K     K
Sbjct: 200 AAPKAKAKPAAK 211


>03_01_0271 + 2097027-2098583
          Length = 518

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 676 PFTAFCIYLYIYLSFTASSKALKPPISIAW 587
           PF A  + LYIYL ++ S+KA  P +   W
Sbjct: 14  PFLALLLPLYIYLRYSRSAKA-NPSLPTEW 42


>11_04_0097 + 13448740-13450725
          Length = 661

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
 Frame = -1

Query: 508 IVSKTVDSFIRG-LEKKLRDMDAEERRKIHEKE---ASIKTAQEKAKLKAMAKEQXXXXX 341
           + S  + + + G L+K  RD D  +  +  E+E   A+ + A+EKA+ +A+AKE+     
Sbjct: 533 VFSDELKALLEGALQKDGRDGDMTKLYEDVEREKAEAAARAAEEKARAEALAKEEEERKK 592

Query: 340 XXXXXXXKTGTAESKDAIKS--DKKPEMQAGSQQVKKVEAK 224
                  +     S+ AI++   +K E +     V   EA+
Sbjct: 593 AEAKAKEEAAARASRAAIEAVLGRKKEGENDDSTVNVEEAQ 633


>08_02_0259 -
           14974526-14974572,14974670-14974742,14974829-14974891,
           14975030-14975097,14975172-14975295,14976434-14976493,
           14976744-14976806,14976902-14977942,14978027-14978093,
           14978188-14978303,14978454-14978540,14978749-14978838,
           14979128-14979214,14979366-14979428,14979509-14979566,
           14980174-14980231,14980349-14980416,14980508-14980587,
           14981084-14981147,14981321-14981392,14981517-14981576,
           14982344-14982398,14982487-14982520,14983845-14983931,
           14984036-14984122,14984211-14984408,14984509-14984639,
           14984739-14984838
          Length = 1066

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -1

Query: 472 LEKKLRDMDAEERRKIHEKEASIKTAQEKAKLKAMAKEQ 356
           LEK +R+ DA   RK+ E++ S K  QE+   ++ A ++
Sbjct: 187 LEKNMRERDAANTRKLMERQLS-KEEQEEITRRSQAMDK 224


>05_03_0035 - 7592177-7592938
          Length = 253

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 301 SKDAIKSDKKPEMQAGSQQVKKVEAKPQQQPAKKVDTN 188
           SK   + + KPE +A  Q   K E KP+  P K+  ++
Sbjct: 213 SKSKPEPESKPEAKAERQPESKPEPKPESAPKKETPSS 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,139,763
Number of Sequences: 37544
Number of extensions: 264253
Number of successful extensions: 732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)