Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14m09
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    27   2.5  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   4.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   5.9  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    25   7.8  

>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 304 LPIACTELTQIYEILNKNISCFGSHTYSEGMRRKSRTARVSLYEH 170
           LPI    L + YE+L+  +  F +H  S+ +    RTA +  Y+H
Sbjct: 681 LPIVALNLVEFYELLHTLLVRFRNHC-SDYLSDLCRTAVLKEYKH 724


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 532  NEMLGPYMDPFGPGSTKIKDGEFFCIGNLVLCYLNLAYNNLTYTSITKLH 383
            N+ML   M  +      +  G F C+  L  C   L   NLT  S+ KLH
Sbjct: 903  NDMLIDEMTAYLSKKESLCSGTFSCL--LACCNSVLRTQNLTSESLNKLH 950


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +1

Query: 166 HRVHIMKL*RSDFFSSSPPNMCDFQNKKYSY*VFH 270
           H V   K+  +D+FSS P N+ D ++ K S+ VFH
Sbjct: 312 HIVKNTKVHDNDYFSSIP-NVDDIRSIKNSWKVFH 345


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 204 KVGPLEFHYMNTMKSNYVFFAHASLFVKKCVY 109
           +V PL F    T KS+Y+ F   +LF K+C Y
Sbjct: 65  RVSPLLFDL--TEKSDYMRFYRLNLFNKECRY 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,571
Number of Sequences: 5004
Number of extensions: 48692
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)