Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14m09
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0746 + 5554686-5556179                                           31   0.86 
05_03_0052 + 7827973-7828031,7829012-7829139,7829243-7829305,783...    29   3.5  
02_05_0378 - 28438918-28439064,28439280-28439313,28439859-284399...    28   8.0  

>02_01_0746 + 5554686-5556179
          Length = 497

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 254 EYFLFWKSHIFGGDEEKKSDR 192
           EY+LF+K+H FGG ++  +DR
Sbjct: 340 EYWLFFKAHAFGGADDADADR 360


>05_03_0052 +
           7827973-7828031,7829012-7829139,7829243-7829305,
           7830323-7830444,7830557-7830672,7830760-7831567,
           7831800-7832528,7832638-7832859,7833089-7833184,
           7833273-7833467,7834303-7834416,7835368-7835651,
           7836216-7836293,7836326-7836449,7836739-7836786
          Length = 1061

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 531 LASISALQFKSSSV-KLLRFSFSFRE*PLPLTEVAEVFLFXTVDFLLIW 674
           LA+I A++ KSS   K+ R    FR+  + LT+  +V    T D  +IW
Sbjct: 450 LAAIQAMRLKSSEKNKMTRDHNGFRKLLIVLTKAGKVIALHTGDGRIIW 498


>02_05_0378 -
           28438918-28439064,28439280-28439313,28439859-28439963,
           28440402-28441558
          Length = 480

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 185 NSSGPTFSPHPLRICVTSKTRNILIKYFINLSQF 286
           +SSGPTFSP  + I     +  +L+ Y+  +S++
Sbjct: 59  DSSGPTFSPLVIAIIGVLASAFLLVSYYTIISKY 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,210,071
Number of Sequences: 37544
Number of extensions: 268370
Number of successful extensions: 634
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)