Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14m09
         (687 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC033790-1|AAH33790.1|  559|Homo sapiens C1orf92 protein protein.      40   0.011
AL356104-1|CAH72938.1|  559|Homo sapiens chromosome 1 open readi...    40   0.011
AK057446-1|BAB71490.1|  354|Homo sapiens protein ( Homo sapiens ...    35   0.24 

>BC033790-1|AAH33790.1|  559|Homo sapiens C1orf92 protein protein.
          Length = 559

 Score = 39.5 bits (88), Expect = 0.011
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
 Frame = -3

Query: 613 KGYSRKEKLKRSSLTDDDLNCKAEMLANEMLGPYMDPFGPGSTKIKDGEFFCIGNLVLCY 434
           KG     + KRS L + +L  +A     E++ P ++P      + +DG+ F  GN VL +
Sbjct: 426 KGIKIGSREKRSILLESELVVEA----TEVVNPLLEP-----VEHRDGKVFMPGNKVLLH 476

Query: 433 LNLAYNNLTYTSI-----TKLHQVLIQQAQHKKHGQPGLIKIVLDGNELPIACTELTQIY 269
           LNL  N +T   +     T  +Q+   +A+    G  GL+ + L  N     C     I 
Sbjct: 477 LNLIRNRITEVGLEGFLATVQYQMQFSKAKSASKGPVGLLWLSLAKNCFAPQCPAYAIIQ 536

Query: 268 EIL 260
           E++
Sbjct: 537 ELM 539


>AL356104-1|CAH72938.1|  559|Homo sapiens chromosome 1 open reading
           frame 92 protein.
          Length = 559

 Score = 39.5 bits (88), Expect = 0.011
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
 Frame = -3

Query: 613 KGYSRKEKLKRSSLTDDDLNCKAEMLANEMLGPYMDPFGPGSTKIKDGEFFCIGNLVLCY 434
           KG     + KRS L + +L  +A     E++ P ++P      + +DG+ F  GN VL +
Sbjct: 426 KGIKIGSREKRSILLESELVVEA----TEVVNPLLEP-----VEHRDGKVFMPGNKVLLH 476

Query: 433 LNLAYNNLTYTSI-----TKLHQVLIQQAQHKKHGQPGLIKIVLDGNELPIACTELTQIY 269
           LNL  N +T   +     T  +Q+   +A+    G  GL+ + L  N     C     I 
Sbjct: 477 LNLIRNRITEVGLEGFLATVQYQMQFSKAKSASKGPVGLLWLSLAKNCFAPQCPAYAIIQ 536

Query: 268 EIL 260
           E++
Sbjct: 537 ELM 539


>AK057446-1|BAB71490.1|  354|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32884 fis, clone TESTI2004229. ).
          Length = 354

 Score = 35.1 bits (77), Expect = 0.24
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
 Frame = -3

Query: 613 KGYSRKEKLKRSSLTDDDLNCKAEMLANEMLGPYMDPFGPGSTKIKDGEFFCIGNLVLCY 434
           KG     + KRS L + +   +  + A E++ P ++P      + +DG+ F  GN VL +
Sbjct: 211 KGIKIGSREKRSILLESE---QLVVEATEVVNPLLEP-----VEHRDGKVFMPGNKVLLH 262

Query: 433 LNLAYNNLTYTSI-----TKLHQVLIQQAQHKKHGQPGLIKIVL 317
           LNL  N +T   +     T  +Q+   +A+    G  GL+ + L
Sbjct: 263 LNLIRNRITEVGLEGFLATVQYQMQFSKAKSASKGPVGLLWLSL 306


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,311,938
Number of Sequences: 237096
Number of extensions: 1632626
Number of successful extensions: 2910
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2910
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)