Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14m09
(687 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014298-2800|AAF48917.3| 380|Drosophila melanogaster CG7440-PA... 34 0.21
AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch dep... 33 0.37
AF132141-1|AAD33588.1| 1095|Drosophila melanogaster G/T mismatch... 33 0.37
AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA p... 33 0.37
BT003535-1|AAO39539.1| 817|Drosophila melanogaster RE09158p pro... 31 1.1
AE014296-1279|AAF50544.2| 817|Drosophila melanogaster CG32372-P... 31 1.1
AY119261-1|AAM51121.1| 940|Drosophila melanogaster SD22791p pro... 29 4.5
AL031583-4|CAA20898.1| 1045|Drosophila melanogaster EG:34F3.4 pr... 29 4.5
AE014298-108|AAF45550.2| 940|Drosophila melanogaster CG16989-PA... 29 4.5
AY119589-1|AAM50243.1| 852|Drosophila melanogaster LD15947p pro... 29 6.0
AE014297-2365|AAF55429.2| 852|Drosophila melanogaster CG5824-PA... 29 6.0
>AE014298-2800|AAF48917.3| 380|Drosophila melanogaster CG7440-PA,
isoform A protein.
Length = 380
Score = 33.9 bits (74), Expect = 0.21
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 91 MYLYLYIYAFFNK*TCMS--KKYVITFHRVHIMKL*RSDFFS 210
M +LY YA++N +CM +Y + FH VH +L D+F+
Sbjct: 305 MDFWLYKYAYYNPRSCMDCLSEYPVAFHYVHSKQLYVYDYFN 346
>AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch depedent
uracil/thymineDNA glycosylase protein.
Length = 1738
Score = 33.1 bits (72), Expect = 0.37
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = -3
Query: 550 KAEMLANEMLGPYMDPFGPGSTKIKDGEFFCIGN-----LVLCYLNLAYNNLTYTSITKL 386
+++ + +E + P MDP P S+ DG+ F L + N + N Y S+
Sbjct: 1018 ESDQVQSEKMIPQMDPTVPSSSNATDGKSFSYTAENTPLLPVSNHNPSINENNYLSVMGS 1077
Query: 385 HQVLIQQ-AQHKKHGQPGLIK 326
Q L QQ + KK G+P IK
Sbjct: 1078 QQPLSQQPLEKKKRGRPKKIK 1098
>AF132141-1|AAD33588.1| 1095|Drosophila melanogaster G/T
mismatch-specific thymineDNA glycosylase protein.
Length = 1095
Score = 33.1 bits (72), Expect = 0.37
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = -3
Query: 550 KAEMLANEMLGPYMDPFGPGSTKIKDGEFFCIGN-----LVLCYLNLAYNNLTYTSITKL 386
+++ + +E + P MDP P S+ DG+ F L + N + N Y S+
Sbjct: 375 ESDQVQSEKMIPQMDPTVPSSSNATDGKSFSYTAENTPLLPVSNHNPSINENNYLSVMGS 434
Query: 385 HQVLIQQ-AQHKKHGQPGLIK 326
Q L QQ + KK G+P IK
Sbjct: 435 QQPLSQQPLEKKKRGRPKKIK 455
>AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA
protein.
Length = 1738
Score = 33.1 bits (72), Expect = 0.37
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = -3
Query: 550 KAEMLANEMLGPYMDPFGPGSTKIKDGEFFCIGN-----LVLCYLNLAYNNLTYTSITKL 386
+++ + +E + P MDP P S+ DG+ F L + N + N Y S+
Sbjct: 1018 ESDQVQSEKMIPQMDPTVPSSSNATDGKSFSYTAENTPLLPVSNHNPSINENNYLSVMGS 1077
Query: 385 HQVLIQQ-AQHKKHGQPGLIK 326
Q L QQ + KK G+P IK
Sbjct: 1078 QQPLSQQPLEKKKRGRPKKIK 1098
>BT003535-1|AAO39539.1| 817|Drosophila melanogaster RE09158p
protein.
Length = 817
Score = 31.5 bits (68), Expect = 1.1
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 427 LAYNNLTYTSITKLHQVLIQQAQHKKHGQPGLIKIVLDGNELPIAC 290
L NLT I+ + L+ + K H PG ++I LD N PI C
Sbjct: 463 LCQANLTNNQISTISSELVTNTRCKNHNVPGKLEIHLDDN--PIMC 506
>AE014296-1279|AAF50544.2| 817|Drosophila melanogaster CG32372-PA
protein.
Length = 817
Score = 31.5 bits (68), Expect = 1.1
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 427 LAYNNLTYTSITKLHQVLIQQAQHKKHGQPGLIKIVLDGNELPIAC 290
L NLT I+ + L+ + K H PG ++I LD N PI C
Sbjct: 463 LCQANLTNNQISTISSELVTNTRCKNHNVPGKLEIHLDDN--PIMC 506
>AY119261-1|AAM51121.1| 940|Drosophila melanogaster SD22791p
protein.
Length = 940
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 496 PGSTKIKDGEFFCIGNLVLCYLNLAYNNLTYTSITKLHQVLIQQAQHK 353
PG+ K+K + IGNLV A N L L Q+++Q A K
Sbjct: 754 PGNAKVKWNACYVIGNLVKHRAFFANNRLAGILFPTLCQLVVQHANFK 801
>AL031583-4|CAA20898.1| 1045|Drosophila melanogaster EG:34F3.4
protein.
Length = 1045
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 496 PGSTKIKDGEFFCIGNLVLCYLNLAYNNLTYTSITKLHQVLIQQAQHK 353
PG+ K+K + IGNLV A N L L Q+++Q A K
Sbjct: 859 PGNAKVKWNACYVIGNLVKHRAFFANNRLAGILFPTLCQLVVQHANFK 906
>AE014298-108|AAF45550.2| 940|Drosophila melanogaster CG16989-PA
protein.
Length = 940
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 496 PGSTKIKDGEFFCIGNLVLCYLNLAYNNLTYTSITKLHQVLIQQAQHK 353
PG+ K+K + IGNLV A N L L Q+++Q A K
Sbjct: 754 PGNAKVKWNACYVIGNLVKHRAFFANNRLAGILFPTLCQLVVQHANFK 801
>AY119589-1|AAM50243.1| 852|Drosophila melanogaster LD15947p
protein.
Length = 852
Score = 29.1 bits (62), Expect = 6.0
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -2
Query: 440 MLSELGLQQF--NIHKHHKIASSFDSTSSAQKTRP 342
+LS L L+ + ++H+HHK A+ +AQK +P
Sbjct: 711 LLSRLPLESYPEHVHQHHKDATELAEKLAAQKMKP 745
>AE014297-2365|AAF55429.2| 852|Drosophila melanogaster CG5824-PA
protein.
Length = 852
Score = 29.1 bits (62), Expect = 6.0
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -2
Query: 440 MLSELGLQQF--NIHKHHKIASSFDSTSSAQKTRP 342
+LS L L+ + ++H+HHK A+ +AQK +P
Sbjct: 711 LLSRLPLESYPEHVHQHHKDATELAEKLAAQKMKP 745
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,279,473
Number of Sequences: 53049
Number of extensions: 490732
Number of successful extensions: 1404
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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