Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14m09
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.1  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   8.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.3  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 81  NNITKQNQNKSNKYTKKNYW 22
           NN    N N  N Y KK Y+
Sbjct: 328 NNYNNYNNNNYNNYNKKLYY 347



 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -1

Query: 96  IHYILNNITKQNQNKSNKYTKKNY 25
           I  + NN    N N  N Y   NY
Sbjct: 315 ISSLSNNYKYSNYNNYNNYNNNNY 338


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 493 GSTKIKDGEFFCIGNLVLCYLNLAYNNLTY 404
           GS ++ +  F  +G + L  LNL+YN LT+
Sbjct: 322 GSDRVDETTF--LGLIRLIVLNLSYNMLTH 349


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 263 YFINLSQFSTGDWQ 304
           Y++N  QF T D+Q
Sbjct: 276 YYVNTEQFRTSDYQ 289


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 263 YFINLSQFSTGDWQ 304
           Y++N  QF T D+Q
Sbjct: 276 YYVNTEQFRTSDYQ 289


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 263 YFINLSQFSTGDWQ 304
           Y++N  QF T D+Q
Sbjct: 276 YYVNTEQFRTSDYQ 289


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 289 TELTQIYEILNKNISCFGSHTYSE 218
           +E     + + KN+ C G H+ S+
Sbjct: 130 SESKDFIDFIQKNLQCCGVHSLSD 153


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 84  LNNITKQNQNKSNKYTKKNYW 22
           L+N T  N N    Y KK Y+
Sbjct: 318 LSNKTIHNNNNYKNYNKKLYY 338


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 456 MQKNSPSLIFVEPGPKGSI*GPS 524
           +++ SP++  +   PKGSI  PS
Sbjct: 227 LKELSPNIKIIAVDPKGSILDPS 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,208
Number of Sequences: 438
Number of extensions: 3432
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)