Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14m06
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0697 + 27331643-27331693,27331798-27331917,27332007-273320... 152 3e-37
02_05_0168 + 26423464-26423790,26423828-26423941,26424366-264244... 122 3e-28
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 88 8e-18
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 72 4e-13
02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136... 60 2e-09
12_02_0999 - 25134828-25135113,25135479-25135535,25136171-251362... 29 3.0
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 29 5.2
>04_04_0697 +
27331643-27331693,27331798-27331917,27332007-27332057,
27332682-27332787,27333218-27333276,27333372-27333446,
27333909-27333957,27334064-27334140,27334400-27334483
Length = 223
Score = 152 bits (368), Expect = 3e-37
Identities = 78/211 (36%), Positives = 126/211 (59%), Gaps = 1/211 (0%)
Frame = -2
Query: 746 NKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKTEENEILSK 567
N+F++ LGVP + DV GLD E L+ VP+PVL+V+LL+P D + + + + SK
Sbjct: 16 NQFMRGLGVPAEAGFCDVYGLDDEMLAMVPQPVLAVILLYP-QDRKKESVASPSSTVESK 74
Query: 566 GQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAKGLDATARGK 390
++S N+++ KQ I NACGT+ ++H++ N I+L +G + +F + +D R
Sbjct: 75 --KLSKNVYFTKQTIGNACGTVGIIHAIGNALSRIKLVEGSYFDRFYKQTADMDPAQRAS 132
Query: 389 LLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPT 210
LE+ E + AH G T A+D V H++ F D ++ELDG + P++HGP+
Sbjct: 133 FLEEDEEMEKAHSVAVSAGDTE---AKDGVIEHYVCFSCVDDEIFELDGGNSQPISHGPS 189
Query: 209 SQETLLEDAAKICKEFMARDPNEVRFTVIAL 117
S ++LL+DAAK+ K +A+ P + F V+AL
Sbjct: 190 SPDSLLQDAAKVIKARIAQYPGSLNFNVMAL 220
>02_05_0168 +
26423464-26423790,26423828-26423941,26424366-26424448,
26424756-26424804,26425789-26425894,26426460-26426518,
26426604-26426678,26427112-26427160,26427253-26427329,
26427662-26427744,26427852-26427867
Length = 345
Score = 122 bits (294), Expect = 3e-28
Identities = 57/149 (38%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
Frame = -2
Query: 560 EVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAKGLDATARGKLL 384
++S +++ KQ + NACGT+ ++H++ N ++L +G + +F + +D R L
Sbjct: 192 DLSKRVYFTKQTVGNACGTVGVIHAIGNAASKLKLVEGSYFDRFYKQTVDMDPVQRAAFL 251
Query: 383 EKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQ 204
E+ + + +AH A G T+ A VN HF+ F DG LYELDGRK+ P+ HGP+S
Sbjct: 252 EEDDEMEDAHSVAASAGDTD---ANVEVNEHFVCFSCVDGELYELDGRKSQPICHGPSSP 308
Query: 203 ETLLEDAAKICKEFMARDPNEVRFTVIAL 117
+TLL+DAAK+ K +A +P+ + F V+AL
Sbjct: 309 DTLLQDAAKVIKARIASNPDSMNFNVMAL 337
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -2
Query: 743 KFLQKLGVPN-KWNIVDVMGLDPETLSWVPRPVLSVMLLFPIS 618
+F+ LGV + DV GLD E L+ VP+PVL+V+ L+P++
Sbjct: 65 QFMWGLGVAEGEAQFCDVYGLDDELLAMVPQPVLAVLFLYPLT 107
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 87.8 bits (208), Expect = 8e-18
Identities = 68/206 (33%), Positives = 95/206 (46%), Gaps = 21/206 (10%)
Frame = -2
Query: 743 KFLQKLGVPNKW-NIVDVMGLDPETLSWVPRPVLSVMLLFP------------------I 621
+ + LGVP DV LD + L VP+PVL+V+ FP +
Sbjct: 139 QLMWSLGVPEDVAEFHDVYSLDADALEMVPQPVLAVVFCFPDPTQLSTIMGFSLYLIYTL 198
Query: 620 SDAYENHKKTEENEILSKGQEVSGNIFYMKQ--NISNACGTIALVHSVANNTDIIELSDG 447
S +L G++ + +F++KQ ++ NACGTIAL+H+V N I L
Sbjct: 199 SPTSVQDASNPSQHLLITGEKET--LFFIKQIESLGNACGTIALLHAVGNAYSEISLCK- 255
Query: 446 HMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKD 267
R LEK + + AH A G T D V H+I FV+ D
Sbjct: 256 ----------------RAVFLEKDDDMARAHLSAASAGDTKL---SDDVEEHYICFVECD 296
Query: 266 GALYELDGRKAFPVNHGPTSQETLLE 189
G LYELDG K P+NHGP+S ++LL+
Sbjct: 297 GTLYELDGMKPGPINHGPSSSKSLLQ 322
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 72.1 bits (169), Expect = 4e-13
Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
Frame = -2
Query: 548 NIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEG 369
N+F+ KQ I+NAC T A+V SV N+ I LS+ ++K AK L +G + SE
Sbjct: 123 NLFFAKQIINNACATQAIV-SVLLNSPGITLSE-ELKKLKEFAKDLPPDLKGLAIVNSES 180
Query: 368 IINAHKELAQEG--QTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHG--PTSQE 201
I A A+ + S +D +HFIS+V DG LYELDG K P++ G P
Sbjct: 181 IRLASNSFARPEVPEEQKSSVKDDDVYHFISYVPVDGVLYELDGLKEGPISLGKCPGGVG 240
Query: 200 TL--LEDAAKICKEFMAR-DPNEVRFTVIALV 114
+ L + +E + R NE+RF+V+A++
Sbjct: 241 DIGWLRMVQPVIQERIDRFSQNEIRFSVMAIL 272
>02_05_1262 +
35312313-35312343,35312840-35312886,35313614-35313660,
35313740-35313842,35313924-35314691
Length = 331
Score = 60.1 bits (139), Expect = 2e-09
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 10/207 (4%)
Frame = -2
Query: 704 IVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKTEENEILSKGQEVSGNIFYMKQN 525
+ ++ LD +++S + RPV ++ LF + +K E + ++ + N+F+ Q
Sbjct: 27 VEELYSLDVDSISEL-RPVYGLIFLFK----WMAGEKDERPVV----KDPNPNLFFASQV 77
Query: 524 ISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLDAT-ARGKLLEKSEGIINAHKE 348
I NAC T A++ + N E+ G L E G A +G + S+ I AH
Sbjct: 78 IPNACATQAILSILMNRP---EIDIGPELSNLKEFTGAFAPDMKGLAINNSDSIRTAHNS 134
Query: 347 LAQE----GQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPV-----NHGPTSQETL 195
A+ + +D +HFIS++ +G LYELDG K P+ + GP + L
Sbjct: 135 FARPEPFVSDEQRAAGKDDEVYHFISYLPFEGVLYELDGLKEGPISLGQCSGGPDDLDWL 194
Query: 194 LEDAAKICKEFMARDPNEVRFTVIALV 114
I K +E+RF ++A++
Sbjct: 195 RMVQPVIQKRIERYSQSEIRFNLMAII 221
>12_02_0999 -
25134828-25135113,25135479-25135535,25136171-25136296,
25136399-25137289,25137379-25137533
Length = 504
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -2
Query: 326 NTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQE 201
++PSA ++ F+S + DG++ L+G+ F + GP + +
Sbjct: 273 DSPSATGTMSSAFMSSLSMDGSVASLEGKPPFHLISGPVASD 314
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = -2
Query: 629 FPISDAYENHKKTEENEIL-SKGQEVSGNIFYMKQNISNACGTIALVHSVANN 474
+ +SD + +++ EE E+L ++ +E + + +N+S+ C T+ + V N+
Sbjct: 2692 YRVSDGKDPYEQMEEEELLRNRLEESEQDRSKLAENLSSLCATVLKIAGVRNH 2744
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,877,116
Number of Sequences: 37544
Number of extensions: 371705
Number of successful extensions: 873
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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