Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14m06
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin c-t... 138 4e-33
AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin c-t... 135 3e-32
AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin c-t... 128 3e-30
Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical pr... 66 2e-11
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p... 32 0.50
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr... 32 0.50
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr... 32 0.50
U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical p... 31 0.66
AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical ... 29 3.5
AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical ... 29 3.5
AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical ... 29 3.5
AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical ... 29 4.6
AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical ... 29 4.6
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 28 6.1
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 28 6.1
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 28 6.1
U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center... 28 8.1
U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center... 28 8.1
U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center... 28 8.1
U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center... 28 8.1
>AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 3 protein.
Length = 227
Score = 138 bits (334), Expect = 4e-33
Identities = 82/213 (38%), Positives = 122/213 (57%), Gaps = 2/213 (0%)
Frame = -2
Query: 746 NKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKTEENEILSK 567
N FL+K+G+ VDV D E L +VP P L+++L FP ++A E K E E+
Sbjct: 20 NPFLKKIGITGL-ECVDVYSFDDEMLQFVPTPQLALILCFPSAEAREFLSKQYE-EVEKN 77
Query: 566 GQEVSGNIFYMKQN--ISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLDATARG 393
G++ G +F+M Q+ I NACGT AL HS+AN + + L G K+ +AK ++ R
Sbjct: 78 GEKPEG-VFFMNQSEEIGNACGTFALFHSLANLENRVNLGKGKFAKWYEKAKLVNEDERS 136
Query: 392 KLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGP 213
LL + AH+E A+EG+T D V++HFI++V K+G LYE+D FP G
Sbjct: 137 DLLSGDTDLAEAHEETAEEGET---EQSDHVDYHFITYVNKNGQLYEIDSCAPFPRPLGA 193
Query: 212 TSQETLLEDAAKICKEFMARDPNEVRFTVIALV 114
T+ T+++DA+ KE M N + F+ +ALV
Sbjct: 194 TTDSTMIKDASTAIKELMNNVKN-LSFSAMALV 225
>AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 1 protein.
Length = 216
Score = 135 bits (327), Expect = 3e-32
Identities = 84/213 (39%), Positives = 117/213 (54%), Gaps = 2/213 (0%)
Frame = -2
Query: 746 NKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKTEE--NEIL 573
N ++K+GV VDV+ D E++ +P +V+L FP +KK +E I
Sbjct: 16 NPMIEKMGVSGV-KTVDVLFFDDESIG---KPQHAVILCFP------EYKKVDEIMKPIY 65
Query: 572 SKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLDATARG 393
+ + ++F+MKQ ISNACGT AL HS+AN D I L DG K+L EAK + R
Sbjct: 66 EQAKAADDSVFFMKQKISNACGTFALFHSLANLEDRINLGDGSFAKWLAEAKKVGIEERS 125
Query: 392 KLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGP 213
L + + H A +GQT PS + V HHFI FV K+G LYE+D R+ F GP
Sbjct: 126 DFLANNAELAGIHAAAATDGQT-APSGD--VEHHFICFVGKNGILYEIDSRRPFAREIGP 182
Query: 212 TSQETLLEDAAKICKEFMARDPNEVRFTVIALV 114
TS TL++DA C+ + + N V F+ IA+V
Sbjct: 183 TSDATLVKDAGAACQHLIEKLDN-VSFSAIAVV 214
>AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 2 protein.
Length = 249
Score = 128 bits (310), Expect = 3e-30
Identities = 82/233 (35%), Positives = 125/233 (53%), Gaps = 2/233 (0%)
Frame = -2
Query: 746 NKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKTEENEILSK 567
N FL K+GV VDV D E L ++P P L+++L FP S E K E E+
Sbjct: 19 NPFLSKIGVSGV-ECVDVFSFDDEMLQFIPTPQLALILCFPSSGVREFRAKQYE-EVEKN 76
Query: 566 GQEVSGNIFYM--KQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLDATARG 393
G++ G IF+M K+ I +ACGT +L HS+AN + + L +G K+ +AK + R
Sbjct: 77 GKKPDG-IFFMNQKKEIGHACGTFSLFHSLANLENRVNLGNGKFSKWFEKAKLVGEGERS 135
Query: 392 KLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGP 213
LL + AHKE A+EG+T P + V +HFI++V K+G L+E+D FP G
Sbjct: 136 DLLLADTDLAEAHKETAEEGETEHP---EHVAYHFITYVNKNGQLFEIDSCSPFPRPLGA 192
Query: 212 TSQETLLEDAAKICKEFMARDPNEVRFTVIALVASD*LISFLSFEQQKSC*VI 54
T+ T++ DA + + + ++ F+ +AL + SF+Q+ C VI
Sbjct: 193 TTDSTMIRDAFSTSIKDLMDNVQKLSFSAMAL-------NLFSFKQRYICLVI 238
>Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical
protein C08B11.7 protein.
Length = 321
Score = 66.5 bits (155), Expect = 2e-11
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 4/149 (2%)
Frame = -2
Query: 548 NIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEG 369
NIF+ Q I NAC T AL++ + N D + ++ A LD RG L SE
Sbjct: 71 NIFFAHQTIQNACATQALINLLMNVEDTDVKLGNILNQYKEFAIDLDPNTRGHCLSNSEE 130
Query: 368 IINAHKELAQEG--QTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQETL 195
I H +++ + + E N+HF+++V +YELDG + P+ +E
Sbjct: 131 IRTVHNSFSRQTLFELDIKGGESEDNYHFVTYVPIGNKVYELDGLRELPLEVAEFQKEQD 190
Query: 194 LEDAAK--ICKEFMARDPNEVRFTVIALV 114
+A K I + E+ F ++ALV
Sbjct: 191 WIEAIKPVIQQRMQKYSEGEITFNLMALV 219
>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
protein F36H1.2c protein.
Length = 1427
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -2
Query: 458 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 312
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1051 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1099
>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
F36H1.2b protein.
Length = 1379
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -2
Query: 458 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 312
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070
>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
F36H1.2a protein.
Length = 1398
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -2
Query: 458 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 312
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070
>U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical
protein C32E8.9 protein.
Length = 268
Score = 31.5 bits (68), Expect = 0.66
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = -2
Query: 485 VANNTDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED 306
+ ++TDI G F G+ + G E EGI+ + LA G+ N SAE+
Sbjct: 135 ICSSTDIRIAHSGSKIAFFQSKMGIVPSWGGA--EYMEGIMGRGRALAAMGRANVMSAEE 192
Query: 305 PVNHHFISFVQK 270
+ ++ +V K
Sbjct: 193 AKDQGYVDYVYK 204
>AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical
protein Y71H10B.1c protein.
Length = 570
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = -2
Query: 617 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 450
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 316 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 373
Query: 449 --GHMQKFLNEA-KGLDATARGKLLEK 378
GHM+ L + K LD +R K + K
Sbjct: 374 EMGHMESTLADIYKNLDGASRHKPVVK 400
>AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical
protein Y71H10B.1a protein.
Length = 556
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = -2
Query: 617 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 450
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 302 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 359
Query: 449 --GHMQKFLNEA-KGLDATARGKLLEK 378
GHM+ L + K LD +R K + K
Sbjct: 360 EMGHMESTLADIYKNLDGASRHKPVVK 386
>AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical
protein Y71H10B.1b protein.
Length = 559
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = -2
Query: 617 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 450
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 305 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 362
Query: 449 --GHMQKFLNEA-KGLDATARGKLLEK 378
GHM+ L + K LD +R K + K
Sbjct: 363 EMGHMESTLADIYKNLDGASRHKPVVK 389
>AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical
protein C54E4.2a protein.
Length = 226
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +3
Query: 270 FLDKADKMMVDGIFST--WCICLAF 338
F+D D M+VDG S WC C F
Sbjct: 116 FIDMCDDMVVDGSISVDEWCDCFTF 140
>AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical
protein C54E4.2b protein.
Length = 234
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +3
Query: 270 FLDKADKMMVDGIFST--WCICLAF 338
F+D D M+VDG S WC C F
Sbjct: 124 FIDMCDDMVVDGSISVDEWCDCFTF 148
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
protein C05C12.3 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -2
Query: 695 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 519
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320
Query: 518 NACGTIALVHSVANNTDIIELSDGH 444
T+ +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -2
Query: 695 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 519
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320
Query: 518 NACGTIALVHSVANNTDIIELSDGH 444
T+ +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -2
Query: 695 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 519
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 249 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 307
Query: 518 NACGTIALVHSVANNTDIIELSDGH 444
T+ +V NNT + EL+D H
Sbjct: 308 GKDSTVTYATNVFNNTRLKELNDNH 332
>U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center
kinase family protein1, isoform d protein.
Length = 638
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 326 NTPSAEDPVNHHFISFVQKDGALYELDGRKA-FPVNHGPTSQETLLEDA 183
N PSA + H FI +K+ L +L R A + + G +S L ED+
Sbjct: 257 NRPSASTLLKHQFIKRAKKNSILVDLIERAAEYRLRTGVSSDSDLDEDS 305
>U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center
kinase family protein1, isoform b protein.
Length = 651
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 326 NTPSAEDPVNHHFISFVQKDGALYELDGRKA-FPVNHGPTSQETLLEDA 183
N PSA + H FI +K+ L +L R A + + G +S L ED+
Sbjct: 270 NRPSASTLLKHQFIKRAKKNSILVDLIERAAEYRLRTGVSSDSDLDEDS 318
>U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center
kinase family protein1, isoform c protein.
Length = 650
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 326 NTPSAEDPVNHHFISFVQKDGALYELDGRKA-FPVNHGPTSQETLLEDA 183
N PSA + H FI +K+ L +L R A + + G +S L ED+
Sbjct: 269 NRPSASTLLKHQFIKRAKKNSILVDLIERAAEYRLRTGVSSDSDLDEDS 317
>U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center
kinase family protein1, isoform a protein.
Length = 653
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 326 NTPSAEDPVNHHFISFVQKDGALYELDGRKA-FPVNHGPTSQETLLEDA 183
N PSA + H FI +K+ L +L R A + + G +S L ED+
Sbjct: 272 NRPSASTLLKHQFIKRAKKNSILVDLIERAAEYRLRTGVSSDSDLDEDS 320
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,864,603
Number of Sequences: 27780
Number of extensions: 347732
Number of successful extensions: 992
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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