Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14m05
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    27   3.2  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   4.2  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    25   9.8  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   9.8  

>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 238 EFLENFVQDLLHMLNQRHNLSPKQIIVFITE 330
           EFLE+ +QDL H   + +  + K  + FI E
Sbjct: 79  EFLESLIQDLTHYFGKLNENTVKDNVSFIFE 109


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 76  LSGL*LCVLDLCHKRY*RRRFNNIIDLVTHN 168
           L+G+   ++D+C   Y  R   NIID +T N
Sbjct: 532 LNGIGEGIVDICSNLYGTRSMQNIIDKLTSN 562


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -3

Query: 804 QSGSSHHIKMWWALVLTLHQ*IPALVQTF--PPT 709
           Q+G  HH+   W   L  H+   A++  F  PP+
Sbjct: 215 QNGKPHHLASSWEFALLQHKKFTAIMMQFKTPPS 248


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 109 CHKRY*RRRFNNIIDLVTHNVLQ 177
           C + Y RR +NN +D+VT   +Q
Sbjct: 753 CFRLYTRRTYNNELDMVTSPEIQ 775


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,878
Number of Sequences: 5004
Number of extensions: 62616
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)