Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14m05
         (818 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0062 + 19709801-19710832,19712383-19712568,19712661-197128...    28   7.8  
01_06_1218 - 35489224-35489408,35489497-35489626                       28   7.8  
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265...    28   7.8  

>11_06_0062 +
           19709801-19710832,19712383-19712568,19712661-19712867,
           19712940-19713078,19713172-19713380,19713520-19714134
          Length = 795

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 428 NYRLFSLLRQLA*LYVLSRNNRAPGDHH 511
           N+R+ S  R+L+  +V  +N R+P D H
Sbjct: 337 NWRIVSAKRRLSHQFVSGKNRRSPADEH 364


>01_06_1218 - 35489224-35489408,35489497-35489626
          Length = 104

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/56 (21%), Positives = 26/56 (46%)
 Frame = -1

Query: 452 VAMKTTYNFPRPILLRFCFVVTFVFLNSEVPGVKYHECLELSVIKTIICLGDKLCR 285
           V   + +   +  L+  C +V  +  +SEV  V+  +C  +  ++ ++C     CR
Sbjct: 17  VTNSSAFRLEKDCLVLRCALVLLIVASSEVWSVQGEDCWNVDNVRYLVCTHTHKCR 72


>01_06_0529 -
           30026101-30026277,30026363-30026438,30026509-30026570,
           30026882-30027031,30027213-30027338,30028096-30028305,
           30028870-30028938,30029024-30029080,30029131-30029277,
           30029358-30029542,30029623-30029698,30029796-30029918,
           30030395-30030410,30031743-30032745,30033521-30033789,
           30034297-30034415
          Length = 954

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -1

Query: 104 SNTQSQRPDR*QDNARG 54
           SNT+  RPDR QDNA G
Sbjct: 643 SNTKLDRPDRMQDNAHG 659


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,763,443
Number of Sequences: 37544
Number of extensions: 372173
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)