Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14m03
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 31 0.13
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 29 0.72
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 28 1.7
SPBC13G1.06c |isd11||iron sulfur cluster assembly protein Isd11|... 27 2.2
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 27 2.9
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 27 3.8
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 5.0
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch... 26 6.7
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 26 6.7
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S... 25 8.8
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -2
Query: 419 LVVPMSRLHKIRNSFGCLSVRLYNKIPHDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLED 240
++ P HK+ + SV +N +P+ + +H K TI LC K++ + ++++
Sbjct: 501 IISPKKSQHKLYPNPVVESV--FNDVPYSEIDSQLHTIKSTIAARLCGKSHIPLVGHMDE 558
Query: 239 CTK 231
TK
Sbjct: 559 QTK 561
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 29.1 bits (62), Expect = 0.72
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 483 FTNIHQIFKNVLGWHSENFNFFKFL 557
+T+ + F+++L WH+E FN + L
Sbjct: 191 YTSKRKCFRSILSWHNETFNIWTHL 215
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.9 bits (59), Expect = 1.7
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -2
Query: 464 KQSDIHNRN-TRNKHKLVVPMSRLHKIRNSFGCLSVRLYNKIPHDVQNLHIHRFKKTIKE 288
KQS NR+ T N +V P++ L N F YN + H+ +++I R + +E
Sbjct: 254 KQSYYANRSSTINNAMVVAPVTLLKNWENEF-------YNWLGHERIHVYIARCAEDFQE 306
Query: 287 HLCNKAY-YKVNDYLEDCT 234
NK Y + Y CT
Sbjct: 307 FTSNKTYSIIITGYETVCT 325
>SPBC13G1.06c |isd11||iron sulfur cluster assembly protein
Isd11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 102
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -2
Query: 587 YNMHSRESLREKFKEIKVLTMPSQYIFENLMYVRKHIEEFPKQSDIHNRNTRNKHKLVV 411
Y ++ R+KFKE+KV + P+++ + + K +E +QS I+ NK LVV
Sbjct: 26 YREYTIRRTRDKFKELKVESDPAKF-EQGIKDSEKLLEIIQRQSIIN--GMYNKRNLVV 81
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.1 bits (57), Expect = 2.9
Identities = 22/87 (25%), Positives = 43/87 (49%)
Frame = -2
Query: 635 DVEMIFILQKRAIRAIYNMHSRESLREKFKEIKVLTMPSQYIFENLMYVRKHIEEFPKQS 456
+VE + Q R + I + +S+R K +++ + S+ I +L ++EE +
Sbjct: 9 NVEDLKKKQIRQYKEIIRISKAQSIRIKELQLENERLLSENI--DLRTTAINLEE--QLE 64
Query: 455 DIHNRNTRNKHKLVVPMSRLHKIRNSF 375
+ N N NK KL ++R H+ ++F
Sbjct: 65 TVQNENEENKTKLAALLNRFHEETDNF 91
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 521 SQYIFENLMYVRKHIEEFPKQSD 453
+Q IF +L++ +HIEEF + S+
Sbjct: 341 AQQIFRSLVFFLRHIEEFEEASE 363
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe|chr
2|||Manual
Length = 959
Score = 26.2 bits (55), Expect = 5.0
Identities = 24/112 (21%), Positives = 44/112 (39%)
Frame = -2
Query: 539 KVLTMPSQYIFENLMYVRKHIEEFPKQSDIHNRNTRNKHKLVVPMSRLHKIRNSFGCLSV 360
KVL Q +F N + K EE P ++ + H L + L +S L +
Sbjct: 827 KVLEEKGQAVFRNRLSKLKWTEEKPSSKNVLEA-LKKVHVLCGKKASLGSTGSSISQLLL 885
Query: 359 RLYNKIPHDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLEDCTKWE*VARSRH 204
+L P+ + + ++ + +K++Y N + D W R +H
Sbjct: 886 KLLADTPYLKEGVEVYLKSFLLWIQEPSKSHYNANIF-HDFINWGAQQRLKH 936
>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 659 ILLWGNAADVEMIFILQKRAIRAIYNMHSRESLREKFKEIKVLTMPS 519
I LWGNA D+ +L + + N+ ++ + E K I V P+
Sbjct: 187 ISLWGNATDLS---LLTNLSYEELQNLQGQKVVEESQKNILVNDFPT 230
>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 288
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 287 HLCNKAYYKVNDYLEDCTKWE 225
HL K+YY N ++ C WE
Sbjct: 242 HLVQKSYYLQNRHVFPCVHWE 262
>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 576 VHVINSTYSSFLQNKYH 626
V + + YSS LQNKYH
Sbjct: 166 VRISSDKYSSALQNKYH 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,916
Number of Sequences: 5004
Number of extensions: 57471
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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