Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14m02
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   2.1  
SPCC16A11.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   4.9  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    26   4.9  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    26   4.9  
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    26   6.5  

>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 702 YEDDEGMVGDDPAAYLTNEAHDAPVGDEIASTAE 601
           +EDD G        YL N + D+P  DE+A  +E
Sbjct: 13  WEDDLGEDISGQNEYLDNTSQDSPQNDELAEKSE 46


>SPCC16A11.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -2

Query: 741 HDQDQKEEPTQGPYEDDEGMVGDDPAAYLTNEAHDAPVGDEIASTAEPDATE--HS--VH 574
           H ++ +EE    P E+       D  AY+ ++  + P+ +    TAE  A+E  HS  V 
Sbjct: 45  HSRNPQEEDVIPPKENASREDATDSEAYVRSDWDNTPIPELEKETAEKAASERQHSEKVT 104

Query: 573 ASGMLAPPA 547
            +   +PP+
Sbjct: 105 INDKTSPPS 113


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 738 DQDQKEEPTQGPYEDDEGMVGDD 670
           D+D++E+P  G  EDD+ +V  D
Sbjct: 201 DKDEEEKPWSGDEEDDDELVVKD 223


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 744 DHDQDQKEEPTQGPYEDD-EGMVGDDPAAYLTNEAHDAPVGD 622
           D+   Q++E   G  E+D E  V DD     T EA +AP  D
Sbjct: 23  DNHTSQQDELINGHIENDSETAVSDDGLFSNTEEATEAPEAD 64


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -2

Query: 735 QDQKEEPTQGPYEDDEGMVGD---DPAAYLTNEAHDAPVGDEI 616
           +++ EEP +G  E++E    +   DP   +T E  DAP   E+
Sbjct: 124 KEEAEEPQEGGEEEEEEEEEEEITDPLEKMTQECMDAPDCKEV 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,985
Number of Sequences: 5004
Number of extensions: 46577
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)