Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14m02
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0047 + 40731508-40731714,40731834-40731893,40731992-407321...    32   0.42 
06_01_0924 - 7131937-7132041,7132309-7132407,7132498-7132596,713...    29   2.9  
07_03_1528 + 27474973-27475289,27476890-27477073,27477081-274772...    28   9.0  
03_05_0377 + 23613181-23613342,23614469-23614501,23614606-236148...    28   9.0  
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288...    28   9.0  

>01_07_0047 +
           40731508-40731714,40731834-40731893,40731992-40732159,
           40732198-40732203,40732898-40732961,40733395-40733690,
           40733799-40733903,40734030-40734066,40734309-40734403,
           40735226-40735282,40735361-40735438,40735527-40735586
          Length = 410

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -2

Query: 744 DHDQDQKEEPTQGPYEDDEGMVGDDPAAYLTNEAHDAPVGDEIASTAEPDATEHSVHASG 565
           D + D+ +E   GP EDD+    ++      N+ H+A +G   + +   D +  S     
Sbjct: 211 DDEDDEDDEEDAGPSEDDKEDEEEENILIDDNDHHNASLGASFSGSGGNDQSHESAQLKS 270

Query: 564 MLAPP 550
            L  P
Sbjct: 271 ALKKP 275


>06_01_0924 -
           7131937-7132041,7132309-7132407,7132498-7132596,
           7132807-7132905,7133068-7133166,7133316-7133395,
           7133522-7133843
          Length = 300

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 663 RPDRLPPYPHHLRTDPEWVLPSGPG 737
           R  RLPP PHH    P  +L  GPG
Sbjct: 6   RSPRLPPPPHHPSPPPPPLLSVGPG 30


>07_03_1528 +
           27474973-27475289,27476890-27477073,27477081-27477261,
           27477270-27478206,27478384-27479035,27479352-27479798
          Length = 905

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -3

Query: 563 CWRPPLIKVRLGSCT--FLNYRLATEFNKS-IILL*VIS-VRFP 444
           CW PP   + +G CT  F    L   +  S I+LL  IS +RFP
Sbjct: 201 CWLPPYFTITIGICTKSFSRTHLPCGYLLSAIVLLVTISRLRFP 244


>03_05_0377 +
           23613181-23613342,23614469-23614501,23614606-23614879,
           23615105-23615585,23616174-23616846
          Length = 540

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 225 YSEDGGKSFDTSRQHLQLYYKY 290
           Y E+ G   DTSRQ +Q Y  Y
Sbjct: 341 YKEENGDKVDTSRQQMQRYTHY 362


>03_01_0371 +
           2883418-2883967,2884097-2884176,2886283-2886339,
           2887152-2887207,2888006-2888079,2889511-2889798,
           2890043-2890120,2890359-2890882,2891315-2891438,
           2891619-2891767,2891983-2892137,2892477-2892682,
           2892768-2892901,2892983-2893284,2893514-2893617,
           2893858-2893928
          Length = 983

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 738 DQDQKEEPTQGPYEDDEGMVGDDPAAYLTNEAHDAPVGD 622
           +QDQ+ +  Q P    EG++ DDP  + + E  D   GD
Sbjct: 296 EQDQQRDSLQKPVTTLEGLIADDP-YHPSPEDEDTDNGD 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,762,036
Number of Sequences: 37544
Number of extensions: 287323
Number of successful extensions: 732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)