Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14m01
         (336 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816...    29   0.71 
03_02_0607 + 9813510-9813628,9813724-9813898,9813993-9814058,981...    29   1.2  
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213...    27   3.8  
07_03_0502 + 18826595-18826660,18826815-18826885,18828963-188290...    26   6.6  
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525...    26   8.7  
06_03_1322 + 29312569-29312619,29312723-29312828,29312924-29313189     26   8.7  
06_03_1321 + 29308538-29308588,29308728-29308827,29308939-293091...    26   8.7  

>04_03_0092 +
           11079185-11079589,11081319-11081409,11081507-11081612,
           11081694-11081976,11082062-11082210,11083582-11083735,
           11083837-11084793
          Length = 714

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 187 YRDDAIKHYDRSGFQVTWIRHG-VNYDDMKFTKPKATKIR 71
           + +DA+  Y+  G+   W+++G   YDD++    +A  ++
Sbjct: 249 FTEDALARYEALGWHTIWVKNGNTGYDDIRAAIKEAKAVK 288


>03_02_0607 +
           9813510-9813628,9813724-9813898,9813993-9814058,
           9815415-9815463,9815797-9815882,9815969-9816048,
           9816144-9816246,9816364-9816422,9816509-9816524
          Length = 250

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 166 HYDRSGFQVTWIRHGVNYDDMKFTK 92
           H +RSGF+  W R+ + +D+  FT+
Sbjct: 169 HKERSGFEGPWTRNPLQFDNSYFTE 193


>05_07_0280 -
           28920864-28920971,28921076-28921175,28921267-28921394,
           28922013-28922180,28922280-28922395,28922584-28922736,
           28922904-28923047,28923401-28924133
          Length = 549

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 161 RQIRFPSDLDKARRELR*YEVHEAESHKD*KRIRKTKGPYENR 33
           R++  P DLD  RRE+  + +H    H++   I + +G YE+R
Sbjct: 124 RKLARPDDLDDVRREV--HIMHHLTGHRN---IVELRGAYEDR 161


>07_03_0502 +
           18826595-18826660,18826815-18826885,18828963-18829056,
           18829575-18831521
          Length = 725

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 138 VTWKPDLS*CFIASSLYVPTV*IFNLSMATSYSGH 242
           V W PD    F   S Y   V + N++ ++S SGH
Sbjct: 347 VAWHPDKHGIFSVRSAYHLAVSLANVNSSSSSSGH 381


>11_06_0388 +
           23048576-23051546,23051830-23052371,23052444-23052517,
           23053006-23053090,23053281-23053367,23053585-23053657,
           23053882-23053925,23054041-23054169,23054301-23054402,
           23054529-23054585
          Length = 1387

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = -3

Query: 229 EVAIDKLKIYTVGTYRDDAIKHYDRSGFQVTWIRHGVNYDD 107
           ++ +DK+  + VG   DD+++  ++SG  +  I H V+++D
Sbjct: 588 DILVDKV-CHAVGNPLDDSLQPKEQSGVSIEEIEH-VSFED 626


>06_03_1322 + 29312569-29312619,29312723-29312828,29312924-29313189
          Length = 140

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 145 GNRICRNVLSRHLCTCLLY 201
           G R CR++L    C CL Y
Sbjct: 44  GWRACRSILGTEFCQCLAY 62


>06_03_1321 +
           29308538-29308588,29308728-29308827,29308939-29309156,
           29309251-29310591
          Length = 569

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 145 GNRICRNVLSRHLCTCLLYKSLI 213
           G R CR++L    C CL Y  ++
Sbjct: 42  GWRACRSILGTEFCYCLAYYGIM 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,838,749
Number of Sequences: 37544
Number of extensions: 135658
Number of successful extensions: 344
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)