Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14m01
         (336 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022456-1|AAY54872.1|  484|Drosophila melanogaster IP11733p pro...    27   8.0  
BT010246-1|AAQ23564.1|  583|Drosophila melanogaster RE42568p pro...    27   8.0  
AE014298-685|AAF45989.2|  450|Drosophila melanogaster CG12681-PA...    27   8.0  
AE014297-4251|AAF56804.2|  668|Drosophila melanogaster CG9988-PA...    27   8.0  

>BT022456-1|AAY54872.1|  484|Drosophila melanogaster IP11733p
           protein.
          Length = 484

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +2

Query: 20  HHI--RFYFHKVLWFSVFSSNLCGFRLRELH 106
           HH+       K  WFS+    +CG +L ++H
Sbjct: 172 HHLMMNLMICKTSWFSMLPDRICGEKLEKMH 202


>BT010246-1|AAQ23564.1|  583|Drosophila melanogaster RE42568p
           protein.
          Length = 583

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 151 RICRNV-LSRHLCTCLLYKSLICRWPPHI 234
           R C +  +  H CTC+ YK L  +W   I
Sbjct: 437 RSCEDAGIPEHFCTCVPYKRLDTQWAKSI 465


>AE014298-685|AAF45989.2|  450|Drosophila melanogaster CG12681-PA
           protein.
          Length = 450

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +2

Query: 20  HHI--RFYFHKVLWFSVFSSNLCGFRLRELH 106
           HH+       K  WFS+    +CG +L ++H
Sbjct: 138 HHLMMNLMICKTSWFSMLPDRICGEKLEKMH 168


>AE014297-4251|AAF56804.2|  668|Drosophila melanogaster CG9988-PA
           protein.
          Length = 668

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 151 RICRNV-LSRHLCTCLLYKSLICRWPPHI 234
           R C +  +  H CTC+ YK L  +W   I
Sbjct: 522 RSCEDAGIPEHFCTCVPYKRLDTQWAKSI 550


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,087,305
Number of Sequences: 53049
Number of extensions: 227425
Number of successful extensions: 475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 756348948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)