Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14m01
         (336 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50795-2|CAA90663.1|  618|Caenorhabditis elegans Hypothetical pr...    28   1.4  
AC006729-7|AAF60463.1|  157|Caenorhabditis elegans Hypothetical ...    27   2.5  
Z81522-6|CAB04230.1|  277|Caenorhabditis elegans Hypothetical pr...    27   3.3  
AF063007-6|AAC16427.2|  523|Caenorhabditis elegans Taf (tbp-asso...    27   3.3  
Z75537-3|CAA99836.1| 1096|Caenorhabditis elegans Hypothetical pr...    26   5.8  
Z81593-11|CAI94505.2|  360|Caenorhabditis elegans Hypothetical p...    26   7.7  
Z81115-6|CAD45598.1|  630|Caenorhabditis elegans Hypothetical pr...    26   7.7  
AL032658-6|CAA21747.2|  630|Caenorhabditis elegans Hypothetical ...    26   7.7  

>Z50795-2|CAA90663.1|  618|Caenorhabditis elegans Hypothetical
           protein R166.2 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -3

Query: 208 KIYTVGTYRDDA---IKHYDRSGFQVTWIRHGVNYDD 107
           +I+ +  Y DD+    + +D +  ++ W+R+G+ YDD
Sbjct: 75  QIFDLYVYMDDSDLPFRQFDSAPEKLIWMRNGMKYDD 111


>AC006729-7|AAF60463.1|  157|Caenorhabditis elegans Hypothetical
           protein Y24D9A.6 protein.
          Length = 157

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 148 NRICRNVLSRHLCTCL 195
           NR+ RNVL R LC CL
Sbjct: 93  NRVKRNVLDRCLCVCL 108


>Z81522-6|CAB04230.1|  277|Caenorhabditis elegans Hypothetical
           protein F32B4.5 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 15  RGTTFASIFIRSFGFPYSLLIFVAFGFVNF 104
           +GTT +  F+ SF FP+     + F  +NF
Sbjct: 195 KGTTTSPFFLLSFFFPFFCSFLLRFSPINF 224


>AF063007-6|AAC16427.2|  523|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 4
           protein.
          Length = 523

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -2

Query: 173 DKTLRQIRFPSDLDKARRELR*YEVHEAES 84
           D   RQ+RF  DLD+   ELR  E  E ES
Sbjct: 392 DDVKRQLRFLEDLDRQEEELR--ESREKES 419


>Z75537-3|CAA99836.1| 1096|Caenorhabditis elegans Hypothetical
           protein F18E2.3 protein.
          Length = 1096

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +1

Query: 157 CRNVLSRHLCTCLLYKSLICRWPPHIQDTDSD 252
           C+ +++  +   L YK +ICR     ++  +D
Sbjct: 154 CKGIVTPQMSATLTYKDIICRMTEDFEEDSAD 185


>Z81593-11|CAI94505.2|  360|Caenorhabditis elegans Hypothetical
           protein T20B3.16 protein.
          Length = 360

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 184 CTCLLYKSLICRWPPHIQDTD 246
           C+C +Y   +C  PP I D +
Sbjct: 214 CSCNVYMYFVCELPPTINDNN 234


>Z81115-6|CAD45598.1|  630|Caenorhabditis elegans Hypothetical
           protein Y76A2B.6 protein.
          Length = 630

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 30  ASIFIRSFG-FPYSLLIFVAFGFVNFISS*FTPCLIQVTWKPD 155
           +S+F  +F  FP  ++  V+  FVN     F P  I  T  P+
Sbjct: 578 SSVFFSNFQLFPLKIIFSVSVNFVNIALLVFLPIFITHTISPE 620


>AL032658-6|CAA21747.2|  630|Caenorhabditis elegans Hypothetical
           protein Y76A2B.6 protein.
          Length = 630

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 30  ASIFIRSFG-FPYSLLIFVAFGFVNFISS*FTPCLIQVTWKPD 155
           +S+F  +F  FP  ++  V+  FVN     F P  I  T  P+
Sbjct: 578 SSVFFSNFQLFPLKIIFSVSVNFVNIALLVFLPIFITHTISPE 620


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,755,917
Number of Sequences: 27780
Number of extensions: 122018
Number of successful extensions: 345
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)