Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14m01
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   1.7  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   1.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   5.3  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    20   9.2  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    20   9.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   9.2  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    20   9.2  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    20   9.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   9.2  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 151 RICRNVLSRHLCTCLLYKSLICR 219
           R C NV+ + LC  +     +CR
Sbjct: 52  RFCPNVVPKPLCIKICAPGCVCR 74


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 151 RICRNVLSRHLCTCLLYKSLICR 219
           R C NV+ + LC  +     +CR
Sbjct: 52  RFCPNVVPKPLCIKICAPGCVCR 74


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 33  SIFIRSFGFPYSLLIFVAFG 92
           S+F+ +FG  + L I   FG
Sbjct: 173 SMFVHTFGAYFGLAISFVFG 192


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 104 HIIVVHAVPYPGHLETGSVVMFYRVISVR 190
           H++ ++   Y    +  S ++  RVI VR
Sbjct: 89  HVVTINETTYTDGSDDYSTLIRVRVIDVR 117


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 104 HIIVVHAVPYPGHLETGSVVMFYRVISVR 190
           H++ ++   Y    +  S ++  RVI VR
Sbjct: 137 HVVTINETTYTDGSDDYSTLIRVRVIDVR 165


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = -3

Query: 136 WIRHGVNYDDM 104
           W+ H  NYD +
Sbjct: 661 WLNHSPNYDQV 671


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 104 HIIVVHAVPYPGHLETGSVVMFYRVISVR 190
           H++ ++   Y    +  S ++  RVI VR
Sbjct: 137 HVVTINETTYTDGSDDYSTLIRVRVIDVR 165


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 104 HIIVVHAVPYPGHLETGSVVMFYRVISVR 190
           H++ ++   Y    +  S ++  RVI VR
Sbjct: 137 HVVAINETTYTDGSDDYSTLIRVRVIDVR 165


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 160 RNVLSRHLCTCLLYKSLICRWPPHIQDTDSDP 255
           R   S H    L+Y+   CR    I+ TD  P
Sbjct: 504 RRFFSFHQWGILVYEPSACRPRHEIRSTDVIP 535


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,998
Number of Sequences: 438
Number of extensions: 1479
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)