Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14l17
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 46 7e-06
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 28 1.1
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 28 1.4
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 1.9
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.3
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 26 4.3
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 26 5.7
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 25 7.6
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 25 7.6
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 25 10.0
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 25 10.0
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 45.6 bits (103), Expect = 7e-06
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = -1
Query: 367 AFVYAFARNNLEIYIAPLMEILNGTSFIAMRSIATKLVSGEEFGKVNSLFGLAEAMMPLV 188
A + A A++++ ++ A +++ ++ ++SIA V E G+V + F + EA+ ++
Sbjct: 536 AVLLAVAKSDVALFTAVIIQAISNMVVPCVQSIALNGVQSEYNGRVLAAFAVFEAVALII 595
Query: 187 YGPLYSRVYMATLNV-LPGAVFLLGA 113
GP+Y+ VY ++ V P +F L A
Sbjct: 596 RGPIYAFVYTESMKVSYPNMIFFLSA 621
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 450 NSVPIKL--VSIAYVDQKLN*ISFQLNLYLANRYITVNSPCIGPNT 581
+SVP K+ VS+A + ISF L+L++RY +V+ PC T
Sbjct: 94 SSVPSKMLGVSLAAISSSFGEISF---LHLSSRYHSVSLPCWSSGT 136
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.9 bits (59), Expect = 1.4
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Frame = +3
Query: 78 HPNMKIAGKVKLAPSRKTA-PGSTLSVAM*TRE*RGP*TSGIIASARPNKEFTLPNSSPL 254
HPN++ LA SRK P S+ S+ M P T II + SSP
Sbjct: 259 HPNIRSIAS--LALSRKALLPISSPSIPMSIYRSTPPDT--IIQQLTTQSDDISAVSSPA 314
Query: 255 TSFVAIDRIAMNDVPFKISINGAIYISKLFLAKAYTKAPMILLIMDIIPSIVSST 419
T + A D + ND + SI G + + F + K ++ I + SS+
Sbjct: 315 TQYSASDYLGSNDTTARPSIFGRSHGTSQFRRRERVKKRHVIKIHEASNKSASSS 369
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -3
Query: 326 YRSVDGNFKWNIIHSDAIDRNETGERGGIWQG 231
+RS DG+++W+++ S ++ N +W G
Sbjct: 935 FRSTDGHYRWHLVKSVCVN-NSADTSTNLWLG 965
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 196 ASSPPPDRTKNSPCQIPPRSPVSLRS 273
ASSP P + N+P +PP VS S
Sbjct: 175 ASSPLPTASANAPLPVPPPRRVSQNS 200
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +3
Query: 357 YTKAPMILLIMDIIPSIVSSTFR*LLKRLIENSVPIKLVSIAYVDQKLN*ISF 515
Y AP+ L+ ++ I SS +R ++++ VP ++ SIA DQ+L+ +S+
Sbjct: 513 YPLAPIFSLVNCVL-YIRSSVYR--FTKMVKKPVPCRVDSIAPWDQRLSLLSW 562
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 245 GIWQGEFFVRSGGGDDAAGLRTSLLPR 165
G W E + GGGDD A +R + R
Sbjct: 388 GEWYFEIKIEKGGGDDGAHVRIGVSRR 414
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +3
Query: 486 VDQKLN*ISFQLNLYLANRYITV---NSPCIGPNTTQTTISSKATRNRRFPG 632
+D+ N L+LY+ N YIT + C+ T T S A + PG
Sbjct: 372 IDRGPNPFMISLDLYVENEYITTLQSDGVCVSTPTGSTAYSVAAGGSLCHPG 423
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 314 QRSDIYLQVVPGESVYESSHDFADNGYYS 400
Q S+++++ G YE+ + DNG+YS
Sbjct: 82 QVSELHIRATRGRWDYENWKESPDNGFYS 110
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 344 PGESVYESSHDFADNGYYS*YCVIY 418
P + Y D+ D GY+S C++Y
Sbjct: 137 PANTQYLFLGDYVDRGYFSIECLLY 161
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 10.0
Identities = 16/64 (25%), Positives = 25/64 (39%)
Frame = +2
Query: 47 LCVFFMFKIQPPKYENSR*SQTGSEQEDSAWQHVERRHVDAGVERSVNQRHHRLRQTEQR 226
L V M K+E+ + G + S W H RH+ + +E R T+
Sbjct: 127 LSVLGMSYSNTSKHESLKYRLQGVTTDPSLWGHEYVRHLASEIEEEFASRQEEEAPTDDL 186
Query: 227 IHLA 238
+ LA
Sbjct: 187 MELA 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,086
Number of Sequences: 5004
Number of extensions: 63263
Number of successful extensions: 199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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