Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l15
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    27   1.4  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   3.1  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   5.5  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    24   7.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    24   9.6  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    24   9.6  

>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 85  LXKKTLFKIKTVFTPAYFHYKSAPERKVFEISLPIVSVPRK 207
           L ++T+ ++KT    A F    +P  KV   S PIV++ +K
Sbjct: 59  LPERTVERLKTECNAALFGAVQSPTHKVAGYSSPIVALRKK 99


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +1

Query: 130 AYFHYKSAPERKVFEISLPIVSVPR---KPCLPT 222
           AY    ++PE KVF+  +P+   P+   KP  PT
Sbjct: 350 AYVAKSTSPELKVFDTVMPVALSPKPAQKPPSPT 383


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 159 FRSRLIVEIGRRENSFN 109
           F SRL VE G+ EN FN
Sbjct: 801 FLSRLNVESGKAENKFN 817


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 294 SALMFHRNFSKSYLNISRCIFLSRS 220
           S LMF+ NF +  L+ S   FL+R+
Sbjct: 672 SPLMFYANFGQEELSASGTSFLNRT 696


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 234  KYILKCLDNFSKSYDETL 287
            KY+L CLD+   ++DE L
Sbjct: 2895 KYMLSCLDDGKYAFDEYL 2912


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 207 FSWHGYDRQRYFKYLAFRSRLIVEIGRRENSFNF 106
           F  HG+ + RY  +   R   + E+    NSF+F
Sbjct: 174 FPGHGFGKLRYCAFPFSRCLTVEELHTLMNSFSF 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,544,688
Number of Sequences: 5004
Number of extensions: 28819
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)