Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l15
         (388 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376...    29   0.97 
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032...    29   0.97 
11_02_0047 + 7716315-7716420,7716518-7716647,7716785-7716856,771...    27   3.9  
08_01_0817 - 7941225-7941330,7941456-7942384,7943498-7943574,794...    27   6.9  
05_04_0123 + 18210069-18213737                                         26   9.1  

>05_04_0124 +
           18232961-18236636,18236810-18237288,18237549-18237629,
           18238033-18238041,18238096-18238248
          Length = 1465

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 101 CLKLKLFSRLPISTISRLLNARYLKYRCLSYPCHE 205
           C+KL    +LP   + RL     LKY C  YP  E
Sbjct: 795 CVKLPPVWQLPFLEVLRLKRMERLKYLCYRYPTDE 829


>05_04_0122 +
           18198594-18202269,18202551-18202591,18203273-18203281,
           18203336-18203551,18204257-18204361,18204761-18204919
          Length = 1401

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 101 CLKLKLFSRLPISTISRLLNARYLKYRCLSYPCHE 205
           C+KL    +LP   + RL     LKY C  YP  E
Sbjct: 795 CVKLPPVWQLPFLEVLRLKRMERLKYLCYRYPTDE 829


>11_02_0047 +
           7716315-7716420,7716518-7716647,7716785-7716856,
           7717007-7717078,7717274-7717345,7717684-7717845,
           7718105-7718176,7718435-7718503,7718788-7718859,
           7718992-7719129,7719386-7719888,7720007-7720171,
           7720267-7720403,7720488-7720707,7720793-7721028,
           7721165-7721632
          Length = 897

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 227 LGVGRQGFRGTDTIGSDISNTL 162
           LG+    F GT TIGSD S+TL
Sbjct: 276 LGLKGNNFNGTLTIGSDYSSTL 297


>08_01_0817 -
           7941225-7941330,7941456-7942384,7943498-7943574,
           7944911-7945286
          Length = 495

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 224 GVGRQGFRGTDTIGSDISNTLRSG 153
           G+G+ G R  DT   D+SN LRSG
Sbjct: 265 GIGQSGSRLGDTWLLDLSNGLRSG 288


>05_04_0123 + 18210069-18213737
          Length = 1222

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 98  HCLKLKLFSRLPISTISRLLNARYLKYRC 184
           +C+KL    +LP   + RL + + LKY C
Sbjct: 793 NCMKLPSVWKLPFLEVLRLKDMKKLKYLC 821


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,433,632
Number of Sequences: 37544
Number of extensions: 168183
Number of successful extensions: 360
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)