Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l15
         (388 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC094704-1|AAH94704.1|  618|Homo sapiens SPG11 protein protein.        29   6.9  
BC067798-1|AAH67798.1|  574|Homo sapiens SPG11 protein protein.        29   6.9  
BC024161-1|AAH24161.1|  425|Homo sapiens KIAA1840 protein protein.     29   6.9  
AY954502-1|AAX54692.1|   66|Homo sapiens colorectal carcinoma-as...    29   6.9  
AK025092-1|BAB15065.1|  425|Homo sapiens protein ( Homo sapiens ...    29   6.9  
AB058743-1|BAB47469.2| 2443|Homo sapiens KIAA1840 protein protein.     29   6.9  
AJ627966-1|CAF31312.1|  108|Homo sapiens immunoglobulin heavy ch...    28   9.1  

>BC094704-1|AAH94704.1|  618|Homo sapiens SPG11 protein protein.
          Length = 618

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 82  DLXKKTLFKIKTVFTPAYFHYKSAPERKVFEISLPIVSVPRKPC 213
           D+  + L K+ T     Y +YK A E K +EI   ++  P+  C
Sbjct: 567 DMVMENLKKLLTYCEDVYLYYKLAYEHKFYEIVNVLLKDPQTGC 610


>BC067798-1|AAH67798.1|  574|Homo sapiens SPG11 protein protein.
          Length = 574

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 82  DLXKKTLFKIKTVFTPAYFHYKSAPERKVFEISLPIVSVPRKPC 213
           D+  + L K+ T     Y +YK A E K +EI   ++  P+  C
Sbjct: 523 DMVMENLKKLLTYCEDVYLYYKLAYEHKFYEIVNVLLKDPQTGC 566


>BC024161-1|AAH24161.1|  425|Homo sapiens KIAA1840 protein protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 82  DLXKKTLFKIKTVFTPAYFHYKSAPERKVFEISLPIVSVPRKPC 213
           D+  + L K+ T     Y +YK A E K +EI   ++  P+  C
Sbjct: 374 DMVMENLKKLLTYCEDVYLYYKLAYEHKFYEIVNVLLKDPQTGC 417


>AY954502-1|AAX54692.1|   66|Homo sapiens colorectal
           carcinoma-associated protein protein.
          Length = 66

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 82  DLXKKTLFKIKTVFTPAYFHYKSAPERKVFEISLPIVSVPRKPC 213
           D+  + L K+ T     Y +YK A E K +EI   ++  P+  C
Sbjct: 15  DMVMENLKKLLTYCEDVYLYYKLAYEHKFYEIVNVLLKDPQTGC 58


>AK025092-1|BAB15065.1|  425|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21439 fis, clone COL04352. ).
          Length = 425

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 82  DLXKKTLFKIKTVFTPAYFHYKSAPERKVFEISLPIVSVPRKPC 213
           D+  + L K+ T     Y +YK A E K +EI   ++  P+  C
Sbjct: 374 DMVMENLKKLLTYCEDVYLYYKLAYEHKFYEIVNVLLKDPQTGC 417


>AB058743-1|BAB47469.2| 2443|Homo sapiens KIAA1840 protein protein.
          Length = 2443

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 82   DLXKKTLFKIKTVFTPAYFHYKSAPERKVFEISLPIVSVPRKPC 213
            D+  + L K+ T     Y +YK A E K +EI   ++  P+  C
Sbjct: 2392 DMVMENLKKLLTYCEDVYLYYKLAYEHKFYEIVNVLLKDPQTGC 2435


>AJ627966-1|CAF31312.1|  108|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 108

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -2

Query: 210 GFSWHGY---DRQRYFKYLAFRSRLIVEIGRRENSFNFK 103
           G  W GY       Y+K  + +SRL + +G  EN F+ K
Sbjct: 46  GLEWIGYIYYSGSTYYK-TSLKSRLTISVGTSENQFSLK 83


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,629,646
Number of Sequences: 237096
Number of extensions: 896107
Number of successful extensions: 5313
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5313
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2641190740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)