Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14l14
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 93 4e-20
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 71 1e-13
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 56 5e-09
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 48 1e-06
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 31 0.22
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 27 2.7
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 27 2.7
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 27 3.5
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.1
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 93.1 bits (221), Expect = 4e-20
Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 7/188 (3%)
Frame = -2
Query: 706 GELLLQNLPSIVCGWVVNAQSNEYILDMCAAPGNKTTHLAEMSKNQACITALDKTLEKTE 527
G +LQ S + + Q NE ILDM +APG K T++A + KN I A D +T+
Sbjct: 319 GHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAALQKNTGIIFANDSNKARTK 378
Query: 526 RIRETCQIQGVTCVTAYAFDATKCHSEESLGIANGPPFPSNCFDKILLDAPCSGLG--QR 353
+ GV +D K +E + G FD++LLDAPCSG G +
Sbjct: 379 ALSANIHRLGVRNAIVCNYDGRKFPNE----VIGG-------FDRVLLDAPCSGTGVIYK 427
Query: 352 PQLINM-MSPKMIKSYKFLQRKLISEAVKLL----KVGGKLVYSTCTITEDENEGLVSWV 188
Q + S + + LQR+L+ A+ + K GG +VYSTC+IT DE+E ++ +
Sbjct: 428 DQSVKTNKSERDFDTLSHLQRQLLLSAIDSVNADSKTGGFIVYSTCSITVDEDEAVIQYA 487
Query: 187 LEKFPCLK 164
L+K P +K
Sbjct: 488 LKKRPNVK 495
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 71.3 bits (167), Expect = 1e-13
Identities = 61/189 (32%), Positives = 90/189 (47%), Gaps = 15/189 (7%)
Frame = -2
Query: 706 GELLLQNLPSIVCGWVVNAQSNEYILDMCAAPGNKTTHLAEM----SKNQACITAL---- 551
G++ Q S+V ++N +S+ +LDMCAAPG+KT L E +K + T L
Sbjct: 123 GDINRQESVSMVPPLLLNVESHHKVLDMCAAPGSKTAQLLEALHKPTKKEDITTLLPSGI 182
Query: 550 ----DKTLEKTERIRETCQIQGVTCVTAYAFDATKCHSEESLGIANGPPFPSNCFDKILL 383
D ++ + + V DA+ + L +G F FD+IL
Sbjct: 183 VIANDSDNKRAHMLVHQIKRLNSPNVLIVNHDASFLPNFH-LSSPDGKKFLK--FDRILA 239
Query: 382 DAPCSGLG---QRPQLINMMSPKMIKSYKFLQRKLISEAVKLLKVGGKLVYSTCTITEDE 212
D PCSG G + L N S K Q K++ ++LL+ GG+LVYSTC++ E
Sbjct: 240 DVPCSGDGTFRKNIALWNEWSLKTALGLHATQIKILMRGLQLLEKGGRLVYSTCSLNPIE 299
Query: 211 NEGLVSWVL 185
NE +VS VL
Sbjct: 300 NEAVVSAVL 308
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 56.0 bits (129), Expect = 5e-09
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Frame = -2
Query: 400 FDKILLDAPCSGLGQRPQLINMM---SPKMIKSYKFLQRKLISEAVKLLKVGGKLVYSTC 230
FD+IL D PCSG G + +++ S S LQ +++ ++LLKVGG LVYSTC
Sbjct: 264 FDRILADVPCSGDGTFRKNLSLWREWSANSAFSLHPLQLRILIRGLQLLKVGGCLVYSTC 323
Query: 229 TITEDENEGLVSWVLE 182
+I ENE +V+ L+
Sbjct: 324 SINPIENEAVVTAALK 339
Score = 34.3 bits (75), Expect = 0.018
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -2
Query: 706 GELLLQNLPSIVCGWVVNAQSNEYILDMCAAPGNKTTHLAEMSKNQACI 560
G + Q S++ ++ + + ILDMCAAPG+KT L E +A I
Sbjct: 139 GNINRQEAVSMLPPLFLDVEPHHVILDMCAAPGSKTAQLIEAVYKKANI 187
>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 48.0 bits (109), Expect = 1e-06
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 8/162 (4%)
Frame = -2
Query: 634 ILDMCAAPGNKTTHLAEMSKNQACITALDKTLEKTERIRETCQIQGVTCVTAYAFDATKC 455
I+D CAAPGNKTTHLA ++ I A ++ ++ + +R+ I G VT D T
Sbjct: 214 IIDGCAAPGNKTTHLAACFP-KSHIFAFERDAKRVQTLRKMVGISGANNVTIEHQDFTLT 272
Query: 454 HSEESLGIANGPPFPSNCFDKILLDAPCSGLG---QRPQLIN-----MMSPKMIKSYKFL 299
+ L ILLD CSG G ++ L+ + +++
Sbjct: 273 DPKSDL---------YRNVTHILLDPSCSGSGIVSRQDYLLGNEQDVTEDTERLENLCSF 323
Query: 298 QRKLISEAVKLLKVGGKLVYSTCTITEDENEGLVSWVLEKFP 173
Q ++ A++ + YSTC++ ENE +V VL + P
Sbjct: 324 QSTILKHALQFPNC-RHVTYSTCSVHRLENEQVVCEVLSQEP 364
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 30.7 bits (66), Expect = 0.22
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = -2
Query: 349 QLINMMSPKMIKSYKFLQRKLISEAVKLLKVGGKLVYSTCTITEDENEGLVSWV 188
Q+I +++ K + FL R LI EA V + + T+T+D ++G+++W+
Sbjct: 178 QVIKVLNQK--NTLVFLSRLLIPEAKIPQSVQEMALQAFFTLTDDNDDGIITWI 229
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = -2
Query: 703 ELLLQNLPSIVCGWVVNAQSNEYILDM 623
+LL++ PS+V WV ++Q++E +L +
Sbjct: 183 DLLVEKQPSVVEAWVCSSQTHEDLLKL 209
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 253 HQLSIVLQPHLSVYVVGICRILSFSVTS-CLLIEVVAPSHYKAHQGVF--YRNNSMEMGV 423
+ ++LQP SVYVV +SF + S C+L+ P Y+ G + + + V
Sbjct: 1097 YNYKVLLQPINSVYVVAGVWPVSFVLLSVCILLYKGLPPFYRQKPGSIPAFSKSLLHRKV 1156
Query: 424 HLLFQDFLPNDTWW 465
+ F + N +W
Sbjct: 1157 VICFLISVINQNFW 1170
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 13 EKPYTISIYFICRVVTHLCE 72
E+ +ISIY +CRV+T + E
Sbjct: 128 ERRSSISIYILCRVLTEIAE 147
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 8.1
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +3
Query: 402 QFDGNGGPFAIPRLSSE*HLVASNA*AVTQVTPWI*Q--VSRILSVFSNVLSNAVMHA*F 575
QFD NG F L S + V + + Q + +S++ + S LS + F
Sbjct: 243 QFDLNGKSFLYHMLVSLHNQVTNTSHLEKQRISTVATLFISKLFEIPS--LSEYLSSTLF 300
Query: 576 LDISARCVVLLPGAAHM 626
LD+ A C+V LP +A +
Sbjct: 301 LDLQAFCIVALPQSAKL 317
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,758
Number of Sequences: 5004
Number of extensions: 60547
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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