Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14l14
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0515 + 18238434-18238545,18238659-18238709,18238844-182388... 84 9e-17
08_02_0422 - 16941628-16941696,16942063-16942144,16942729-169428... 83 2e-16
09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602... 75 7e-14
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277... 73 2e-13
08_02_0423 - 16946435-16946542,16946924-16947045,16947442-169475... 70 2e-12
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296... 64 8e-11
02_02_0666 - 12757555-12757688,12757968-12758029,12758156-127582... 45 5e-05
08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210... 45 7e-05
02_02_0076 + 6581428-6581695,6582247-6582305,6582481-6582531,658... 39 0.005
07_03_0361 + 17215312-17216217 31 0.91
11_02_0033 + 7574845-7575004,7575370-7575429,7575582-7575623,757... 29 4.8
09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957 29 4.8
03_01_0534 + 3996479-3997458,3997938-3998265 28 8.5
>09_04_0515 +
18238434-18238545,18238659-18238709,18238844-18238897,
18239727-18239777,18239845-18239895,18240056-18240210,
18240550-18240663,18240873-18240938,18241478-18241561,
18241640-18241726,18241975-18242066,18242163-18242223,
18242475-18242531,18243129-18243220,18243394-18243584,
18244203-18244321,18244518-18244589,18244699-18244784,
18244866-18244962,18245488-18245622
Length = 608
Score = 84.2 bits (199), Expect = 9e-17
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 3/166 (1%)
Frame = -2
Query: 661 VVNAQSNEYILDMCAAPGNKTTHLAEMSKNQACITALDKTLEKTERIRETCQIQGVTCVT 482
VV+ Q E I+D CAAPG KT +A Q I ALD + + E ++ + +
Sbjct: 409 VVDPQPGETIIDCCAAPGGKTLFMAARLSGQGKIWALDINKGRLRILMEAAKLHNLDAMI 468
Query: 481 AYAFDATKCHSEESLGIANGPPFPSNCFDKILLDAPCSGLG---QRPQLINMMSPKMIKS 311
+ + +++E+ FDK+LLDAPCSGLG +R L + ++
Sbjct: 469 SDIHADLRLYAKETTAT----------FDKVLLDAPCSGLGVLSKRADLRWNRQFEDLEE 518
Query: 310 YKFLQRKLISEAVKLLKVGGKLVYSTCTITEDENEGLVSWVLEKFP 173
LQ +L+ A L+K GG LVYSTC+I +ENE ++ +++ P
Sbjct: 519 LMCLQDELLDSASMLVKPGGILVYSTCSIDPEENEHRIAAFVQRHP 564
>08_02_0422 -
16941628-16941696,16942063-16942144,16942729-16942829,
16944422-16944630,16944933-16945140
Length = 222
Score = 83.4 bits (197), Expect = 2e-16
Identities = 40/90 (44%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -2
Query: 433 IANGPPFPSNCFDKILLDAPCSGLGQRPQLI-NMMSPKMIKSYKFLQRKLISEAVKLLKV 257
+ N F N FD++LLDAPCS LG RP+L + + ++++ QR++ +AVKL+
Sbjct: 106 VENSKGFLPNSFDRVLLDAPCSALGLRPRLFAGEETLESLRNHATYQRRMFDQAVKLVHP 165
Query: 256 GGKLVYSTCTITEDENEGLVSWVLEKFPCL 167
GG +VYSTCTI ENE LV + L+K+ L
Sbjct: 166 GGVIVYSTCTINPGENEALVRYALDKYKFL 195
>09_04_0480 +
17958726-17958926,17959294-17959382,17960176-17960242,
17960329-17960444,17960978-17961044,17961158-17961206,
17961630-17961715,17961825-17962078,17962158-17962213,
17962683-17962768,17963047-17963139,17963790-17964219,
17964338-17964861,17964962-17965190,17965271-17965566
Length = 880
Score = 74.5 bits (175), Expect = 7e-14
Identities = 58/192 (30%), Positives = 87/192 (45%), Gaps = 16/192 (8%)
Frame = -2
Query: 706 GELLLQNLPSIVCGWVVNAQSNEYILDMCAAPGNKTTHLAEMSKNQ--------ACITAL 551
G + Q S+V +N Q + +ILDMCAAPG+KT L EM A + A
Sbjct: 170 GNITRQEAVSMVPPLFLNVQPDHHILDMCAAPGSKTFQLLEMIHQSTKPGMLPNALVVAN 229
Query: 550 DKTLEKTERI----RETCQIQG-VTCVTAYAFDATKCHSEESLGIANGPPFPSNCFDKIL 386
D +++ + + C VT A F S + FD++L
Sbjct: 230 DVDVQRCNLLIHQTKRMCTANLIVTNHEAQNFPGCNLAKFSSETCTDESKLQRLEFDRVL 289
Query: 385 LDAPCSGLG---QRPQLINMMSPKMIKSYKFLQRKLISEAVKLLKVGGKLVYSTCTITED 215
D PCSG G + P + + M LQ ++ + LLKVGG++VYSTC++
Sbjct: 290 CDVPCSGDGTVRKAPDMWRKWNAGMGNGLHRLQVEIAMRGIGLLKVGGRIVYSTCSMNPV 349
Query: 214 ENEGLVSWVLEK 179
ENE +V+ +L +
Sbjct: 350 ENEAVVAEILRR 361
>09_06_0199 +
21526872-21527250,21527431-21527594,21527673-21527736,
21528001-21528134,21528302-21528385,21528526-21528600,
21528683-21528754,21528852-21528925,21529185-21529282,
21529355-21529464,21529794-21529862,21529944-21530018,
21530519-21530611,21530690-21530769,21530877-21530976,
21531150-21531586,21531676-21531706,21532873-21533822,
21533982-21534201
Length = 1102
Score = 73.3 bits (172), Expect = 2e-13
Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 23/199 (11%)
Frame = -2
Query: 706 GELLLQNLPSIVCGWVVNAQSNEYILDMCAAPGNKTTHLAEMSKNQA-CITALDKTLEKT 530
G + Q S + + Q E I+DM AAPG KTT++ + KN C + T
Sbjct: 321 GHYMKQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIGALMKNTGQCALPVFSTFCSY 380
Query: 529 ERIRETCQIQGVTCVTAYAFDATKCH----SEESLGIAN-------GPPFPS----NCFD 395
RI + A F+ + H + +G+ N G P N D
Sbjct: 381 RRI-----------IYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPKVLGMNSVD 429
Query: 394 KILLDAPCSGLG---QRPQLINMMSPKMIKSYKFLQRKLISEAVKLL----KVGGKLVYS 236
++LLDAPC+G G + PQ+ + I+ F+Q++L+ A+ L+ K GG +VYS
Sbjct: 430 RVLLDAPCTGTGTIWKDPQIKTSKGIEDIRDCAFVQKQLLLAAIDLVDANSKTGGYIVYS 489
Query: 235 TCTITEDENEGLVSWVLEK 179
TC++ ENE ++ + L+K
Sbjct: 490 TCSLMIPENEAVIDYALKK 508
>08_02_0423 -
16946435-16946542,16946924-16947045,16947442-16947504,
16949707-16949844,16950062-16950170,16950610-16950934,
16952482-16952645
Length = 342
Score = 69.7 bits (163), Expect = 2e-12
Identities = 35/70 (50%), Positives = 49/70 (70%)
Frame = -2
Query: 709 KGELLLQNLPSIVCGWVVNAQSNEYILDMCAAPGNKTTHLAEMSKNQACITALDKTLEKT 530
+GE+ LQNLPS+V V++ Q E ILDMCAAPG KTT +A + K+Q I ALD++ K
Sbjct: 249 EGEIFLQNLPSVVAARVLDPQPGERILDMCAAPGGKTTAIAILMKDQGEIIALDRSHNKL 308
Query: 529 ERIRETCQIQ 500
+ I TC+++
Sbjct: 309 KSI--TCKME 316
>02_05_0583 +
30128795-30129158,30129342-30129505,30129602-30129665,
30130082-30130215,30130369-30130452,30130580-30130654,
30130734-30130805,30130892-30130965,30131217-30131269,
30131388-30131497,30131824-30131892,30131975-30132049,
30132449-30132508,30132555-30132647,30132718-30132797,
30132877-30132976,30133153-30133590
Length = 702
Score = 64.5 bits (150), Expect = 8e-11
Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 27/203 (13%)
Frame = -2
Query: 706 GELLLQNLPSIVCGWVVNAQSNEYILDMCAAPGNKTTHLAEMSKNQACITALDKTLEKTE 527
G + Q S + + Q E I+DM AAPG KTT++ + KN I A + ++
Sbjct: 316 GHYMKQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIGALMKNTGIIYANEFNEKRLH 375
Query: 526 RIRETCQIQGVTCVTAYAFDATKCHSEESLGIANGPPFPSNCFDKILLDAPCSGLG---Q 356
+ GVT +D + + LG+ N D++LLDAPC+G G +
Sbjct: 376 GLLGNIHRMGVTNTIVCNYDGKEL--PKVLGM--------NSVDRVLLDAPCTGTGTIWK 425
Query: 355 RPQLINMMSPKMIKSYKFLQRKLISEAVKLL------------------------KVGGK 248
PQ+ + I+ F+Q+ ++ AV L K GG
Sbjct: 426 DPQIKTSKGIEDIRDCAFVQKFFLNRAVILYWLSTSITLKLQLLLAAIDLVDANSKTGGY 485
Query: 247 LVYSTCTITEDENEGLVSWVLEK 179
+VYSTC++ ENE +V + L+K
Sbjct: 486 IVYSTCSLMIPENEAVVDYALKK 508
>02_02_0666 -
12757555-12757688,12757968-12758029,12758156-12758223,
12758359-12758490,12759116-12759351,12759451-12759648,
12760123-12760213,12760566-12760710,12760837-12760955
Length = 394
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = -2
Query: 301 LQRKLISEAVKLLKVGGKLVYSTCTITEDENEGLVSWVLEK 179
LQ +L++ KLLK GG LVYSTC++T +NE +V L K
Sbjct: 306 LQLRLLTNGFKLLKTGGSLVYSTCSLTVAQNENVVQQFLCK 346
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2
Query: 658 VNAQSNEYILDMCAAPGNKTTHLAEMSKNQACITALDKTLEKTERIRETCQ 506
++ Q E++LD+CAAPG K LA+M + +T +D + R Q
Sbjct: 103 LDVQPGEHVLDLCAAPGAKLCMLADMLGGRGSLTGVDVAKHRLAACRTMLQ 153
>08_02_1046 -
23919990-23920183,23920251-23920479,23920624-23921057,
23921426-23921567,23922163-23922255,23923132-23923245,
23924181-23924266,23924458-23924506,23924717-23924783,
23925550-23925665,23925698-23925821,23926465-23926553,
23926810-23927061
Length = 662
Score = 44.8 bits (101), Expect = 7e-05
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Frame = -2
Query: 397 DKILLDAPCSGLGQRP-QLINMM----SPKMIKSYKFLQRKLISEAVKLLKVGGKLVYST 233
D +LD C+ G + QL+ M+ P ++ ++ ++ S + LLKVGG++VYST
Sbjct: 227 DHHVLDM-CAAPGSKTFQLLEMIHQSKEPGLLPRALSIKPRIFSSGIALLKVGGRMVYST 285
Query: 232 CTITEDENEGLVSWVLEK 179
C++ ENE +++ +L +
Sbjct: 286 CSMNPVENEAVIAELLRR 303
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = -2
Query: 706 GELLLQNLPSIVCGWVVNAQSNEYILDMCAAPGNKTTHLAEM 581
G + Q S+V +N Q + ++LDMCAAPG+KT L EM
Sbjct: 206 GNITRQEAVSMVPPLFLNIQPDHHVLDMCAAPGSKTFQLLEM 247
>02_02_0076 +
6581428-6581695,6582247-6582305,6582481-6582531,
6582766-6582898,6583533-6583618,6583955-6584008,
6584576-6584645,6585198-6585259,6585370-6585457,
6585645-6585728,6585820-6586028
Length = 387
Score = 38.7 bits (86), Expect = 0.005
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 13/82 (15%)
Frame = -2
Query: 391 ILLDAPCSGLGQRPQLINMMSPK-------------MIKSYKFLQRKLISEAVKLLKVGG 251
ILLD CSG G + ++ + P I+ QRK +S A+ V
Sbjct: 265 ILLDPSCSGSGISTERLDHLLPSHSRGNQDDASTSSRIRKLSAFQRKALSHALSFPSVE- 323
Query: 250 KLVYSTCTITEDENEGLVSWVL 185
++VYSTC+I + ENE +VS VL
Sbjct: 324 RVVYSTCSIHQAENEDVVSSVL 345
Score = 35.1 bits (77), Expect = 0.056
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 634 ILDMCAAPGNKTTHLAEMSKNQACITALD 548
++D CAAPGNKT HLA + + I ++
Sbjct: 218 VIDACAAPGNKTVHLAALMNGEGNIETIN 246
>07_03_0361 + 17215312-17216217
Length = 301
Score = 31.1 bits (67), Expect = 0.91
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 592 LAEMSKNQACITALDKTLEKTERIRETCQIQGVTCVTAYAF--DATKCHSEESLG 434
+ E+S+ + L ++++ RE C+ +G+T V + F A K H EE +G
Sbjct: 114 MVELSRTCGDVDFLLVMGDESDATRELCRREGITAVPHFTFYKGAEKVHEEEGIG 168
>11_02_0033 +
7574845-7575004,7575370-7575429,7575582-7575623,
7576192-7576363,7577881-7577991,7578042-7578132
Length = 211
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 569 LIFRHLSQMCCFVAWSSTHVEYVFIRLCIDYPT 667
++ RH Q+ V W+S V++ +I+L +D T
Sbjct: 149 MVVRHTVQLALIVFWTSIFVKHTWIKLNLDCAT 181
>09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957
Length = 533
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 409 MEMGVHLLFQDFLPNDTWWHQMH 477
+E+ V +L +F+PNDT +H +H
Sbjct: 273 LEVEVPILVYEFIPNDTLYHLIH 295
>03_01_0534 + 3996479-3997458,3997938-3998265
Length = 435
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -2
Query: 367 GLGQRPQLINMMSPKMIKSYKFLQRKLISEAVKLLKVGG--KLVYSTCTITE 218
GLG R +++ + M+ +Y+FL+R E + +L G LV S C++ E
Sbjct: 297 GLGPRWGSMSLSAATMVTTYEFLKRLSAKEGLWVLICGRILLLVSSICSLLE 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,991,952
Number of Sequences: 37544
Number of extensions: 374055
Number of successful extensions: 867
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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