Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14l14
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical ... 89 4e-18
AL132949-37|CAB70100.3| 285|Caenorhabditis elegans Hypothetical... 72 5e-13
AL132949-4|CAB70101.2| 439|Caenorhabditis elegans Hypothetical ... 72 5e-13
AC025721-9|AAK29904.3| 639|Caenorhabditis elegans Hypothetical ... 64 9e-11
AC025716-7|AAK95888.1| 465|Caenorhabditis elegans Hypothetical ... 63 2e-10
Z73976-2|CAA98285.1| 360|Caenorhabditis elegans Hypothetical pr... 31 0.62
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 31 0.62
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 31 0.62
AC024794-6|AAK68493.2| 425|Caenorhabditis elegans Hypothetical ... 29 2.5
AC024793-4|AAF60694.2| 318|Caenorhabditis elegans Hypothetical ... 29 2.5
AC006675-6|AAK84556.2| 433|Caenorhabditis elegans Nuclear hormo... 29 3.3
AL132862-3|CAB70225.1| 294|Caenorhabditis elegans Hypothetical ... 29 4.4
Z93378-1|CAB07582.1| 303|Caenorhabditis elegans Hypothetical pr... 28 5.8
>AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical
protein W07E6.1 protein.
Length = 664
Score = 88.6 bits (210), Expect = 4e-18
Identities = 61/186 (32%), Positives = 92/186 (49%), Gaps = 7/186 (3%)
Frame = -2
Query: 706 GELLLQNLPSIVCGWVVNAQSNEYILDMCAAPGNKTTHLAEMSKNQACITALDKTLEKTE 527
G ++Q L S++ + Q + +LDMC+APG KT+H+A + KN + A D +
Sbjct: 285 GHYMIQGLNSLLPVMALAPQPGDRVLDMCSAPGGKTSHIAALMKNSGVLFANDANFTRCR 344
Query: 526 RIRETCQIQGVTCVTAYAFDATKCHSEESLGIANGPPFPSNCFDKILLDAPCSGLG--QR 353
I GV + C +LG N FD+ILLDAPCSG G +
Sbjct: 345 AIIGNLHRLGVN-------NTVVC----NLGGEEFSKIRPNGFDRILLDAPCSGTGVIWK 393
Query: 352 PQLINMMSPKM-IKSYKFLQRKLISEAVKLLKV----GGKLVYSTCTITEDENEGLVSWV 188
Q + ++ +QR+LI A+ L GG LVYSTC++ +ENE +V+++
Sbjct: 394 DQSVKTSKDSQDVQRRHTMQRQLILSALDSLDANSPNGGYLVYSTCSVLVEENEAVVNFL 453
Query: 187 LEKFPC 170
LE+ C
Sbjct: 454 LERRHC 459
>AL132949-37|CAB70100.3| 285|Caenorhabditis elegans Hypothetical
protein Y53F4B.4a protein.
Length = 285
Score = 71.7 bits (168), Expect = 5e-13
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 4/176 (2%)
Frame = -2
Query: 700 LLLQNLPSIVCGWVVNAQSNEYILDMCAAPGNKTTHLAEMSKNQACITALDKTLEKTERI 521
L+LQ+ S + +++N + + D CAAPG KT+H A + +NQ + A+D+ ++ +
Sbjct: 62 LILQDKASCLPAFLLNPRPGSQVFDTCAAPGMKTSHAAAIMENQGKVWAMDRAADRVATM 121
Query: 520 RETCQIQGVTCVTAYAFDATKCHSEESLGIANGPPFPSNCFDKILLDAPCSGLG--QRPQ 347
++ V +++ D K + F F ++D PCSG G +R
Sbjct: 122 KQLLDASKVAIASSFCGDFLKTDVTDK-------KFSKVKF--AIVDPPCSGSGIVKRMD 172
Query: 346 LI--NMMSPKMIKSYKFLQRKLISEAVKLLKVGGKLVYSTCTITEDENEGLVSWVL 185
I + ++ K LQ ++ A+KL + + VYSTC++ E+ENE +V VL
Sbjct: 173 EITGGNAEKERLEKLKNLQAMILKHALKLPGL-KRAVYSTCSVHEEENEQVVDEVL 227
>AL132949-4|CAB70101.2| 439|Caenorhabditis elegans Hypothetical
protein Y53F4B.4b protein.
Length = 439
Score = 71.7 bits (168), Expect = 5e-13
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 4/176 (2%)
Frame = -2
Query: 700 LLLQNLPSIVCGWVVNAQSNEYILDMCAAPGNKTTHLAEMSKNQACITALDKTLEKTERI 521
L+LQ+ S + +++N + + D CAAPG KT+H A + +NQ + A+D+ ++ +
Sbjct: 216 LILQDKASCLPAFLLNPRPGSQVFDTCAAPGMKTSHAAAIMENQGKVWAMDRAADRVATM 275
Query: 520 RETCQIQGVTCVTAYAFDATKCHSEESLGIANGPPFPSNCFDKILLDAPCSGLG--QRPQ 347
++ V +++ D K + F F ++D PCSG G +R
Sbjct: 276 KQLLDASKVAIASSFCGDFLKTDVTDK-------KFSKVKF--AIVDPPCSGSGIVKRMD 326
Query: 346 LI--NMMSPKMIKSYKFLQRKLISEAVKLLKVGGKLVYSTCTITEDENEGLVSWVL 185
I + ++ K LQ ++ A+KL + + VYSTC++ E+ENE +V VL
Sbjct: 327 EITGGNAEKERLEKLKNLQAMILKHALKLPGL-KRAVYSTCSVHEEENEQVVDEVL 381
>AC025721-9|AAK29904.3| 639|Caenorhabditis elegans Hypothetical
protein Y48G8AL.5 protein.
Length = 639
Score = 64.1 bits (149), Expect = 9e-11
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 10/184 (5%)
Frame = -2
Query: 706 GELLLQNLPSIVCGWVVNAQSNEYILDMCAAPGNKTTHLAEM-----SKNQACITALDKT 542
G L Q S++ ++ S ++LD+CAAPG+KTT L EM + + A D
Sbjct: 149 GNLSRQEAVSMIPPLLLAPTSEHFVLDLCAAPGSKTTQLLEMIHENEENPKGMVIANDVD 208
Query: 541 LEKTER-IRETCQ-IQGVTCVTAYAFDATKCHSEESLGIANGPPFPSNCFDKILLDAPCS 368
+++ I T + + C A H +S G FD++L D CS
Sbjct: 209 MKRCYMLIHHTLKRFRTAACAVTCEDAARFPHISDSDGGLIQ-------FDRVLADVICS 261
Query: 367 GLG---QRPQLINMMSPKMIKSYKFLQRKLISEAVKLLKVGGKLVYSTCTITEDENEGLV 197
G G + P++ +P+ +Q + + + LKVGG++VYSTC++ E+E +V
Sbjct: 262 GDGTLRKNPEIWKKWTPQDGLGLHRMQIAIARKGAQQLKVGGRMVYSTCSMNPIEDEAVV 321
Query: 196 SWVL 185
+ +L
Sbjct: 322 AQLL 325
>AC025716-7|AAK95888.1| 465|Caenorhabditis elegans Hypothetical
protein Y39G10AR.21 protein.
Length = 465
Score = 62.9 bits (146), Expect = 2e-10
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Frame = -2
Query: 649 QSNEYILDMCAAPGNKTTHLAEMSKNQACITALDKTLEKTERIRETCQIQGVTCVTAYAF 470
Q ++ +LDMCAAPG K+ LA +S + I D L + +++ + +
Sbjct: 251 QKDDSLLDMCAAPGGKSL-LAALSNLPSKIVCNDFKLARLGQLKRA--LMTYVPEDSETI 307
Query: 469 DATKCHSEESLGIANGPPFPSNCFDKILLDAPCSG-----LGQRPQLINMMSPKMIKSYK 305
D +++ + F + +DK+L+D PCS L + S +
Sbjct: 308 DKFVLKRKDASDVKTWDEFEA--YDKVLVDVPCSTDRLSVSTDDGNLFSTGSTQQRLDLP 365
Query: 304 FLQRKLISEAVKLLKVGGKLVYSTCTITEDENEGLV 197
LQ K++ A++ +KVGG +VYSTCT++ +NE +V
Sbjct: 366 VLQTKILVNALRSVKVGGSVVYSTCTLSPSQNEAVV 401
>Z73976-2|CAA98285.1| 360|Caenorhabditis elegans Hypothetical
protein T07C12.6 protein.
Length = 360
Score = 31.5 bits (68), Expect = 0.62
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -2
Query: 337 MMSPKMIKSYKFLQRKLISEAVKLLKVGGKLVYSTCTITEDENEGLVSWVLEKFP 173
M SP+ K + QR + E ++ L+VG +LV S G+++ +LE P
Sbjct: 226 MESPRRKKFFTISQRFQVKENLRALRVGRRLVISVIVTVVVCGVGIIALILEVVP 280
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 565 CITALDKTLEKTERIRETCQIQGVTCVTAYAFDATK 458
C +L+++LEK + ETC +GVT V AF T+
Sbjct: 3618 CHKSLERSLEKPSQQDETCATRGVTEVVQNAFAVTE 3653
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 565 CITALDKTLEKTERIRETCQIQGVTCVTAYAFDATK 458
C +L+++LEK + ETC +GVT V AF T+
Sbjct: 3618 CHKSLERSLEKPSQQDETCATRGVTEVVQNAFAVTE 3653
>AC024794-6|AAK68493.2| 425|Caenorhabditis elegans Hypothetical
protein Y48G1BM.1 protein.
Length = 425
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = -3
Query: 492 LASQLMHLMPPSVIRKKVLE*QMDPHFHRIVSI 394
LA + HLMPP+ I++++++ ++D +VS+
Sbjct: 125 LARKSPHLMPPTYIKEEIMDDELDEVKEEVVSV 157
>AC024793-4|AAF60694.2| 318|Caenorhabditis elegans Hypothetical
protein Y48G1BL.1 protein.
Length = 318
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = -3
Query: 492 LASQLMHLMPPSVIRKKVLE*QMDPHFHRIVSI 394
LA + HLMPP+ I++++++ ++D +VS+
Sbjct: 90 LARKSPHLMPPTFIKEEIMDDELDEVKEEVVSV 122
>AC006675-6|AAK84556.2| 433|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 98 protein.
Length = 433
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +1
Query: 214 HLQL*YRYCKLIYHQLSIVLQPHLSVYVVGICRILSFSVTSCLLIEVVAPSHYKAHQGVF 393
H +L Y C+L +HQ+ LQ ++ V + +LS ++ + ++ P + K +
Sbjct: 335 HEELSYMICQLCFHQVGKKLQGNILKTVEKLQEVLSNNLHDYYVNQMNQPKYSKRIARMM 394
Query: 394 YRNNSME 414
NN++E
Sbjct: 395 KINNTVE 401
>AL132862-3|CAB70225.1| 294|Caenorhabditis elegans Hypothetical
protein Y73F8A.6 protein.
Length = 294
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 362 QATTRRIKEYFIETIRWKWGSICYSKTFFRMTLGGIKCISCDASNTLDLTGFSNP 526
++ T K+ E I+ K+G+ + + F GG KC DA+ +T ++NP
Sbjct: 129 ESVTAEHKKELNEEIKEKFGA--FKENCFPKPSGGCKCNEKDANGNEVVTAYNNP 181
>Z93378-1|CAB07582.1| 303|Caenorhabditis elegans Hypothetical
protein F19H8.2 protein.
Length = 303
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 664 WVVNAQSNEYILDMCAAPGNKTTHLAEMS 578
W + +SNE I+++ A GN TT L ++S
Sbjct: 79 WCGHLKSNETIVNILGAVGNSTTDLQDVS 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,623,948
Number of Sequences: 27780
Number of extensions: 344067
Number of successful extensions: 807
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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