Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14l13
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 50 3e-07
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 29 0.95
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.3
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 28 1.7
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 27 2.9
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 27 3.8
SPBC14C8.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 3.8
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr... 26 5.0
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 26 6.7
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 8.8
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 25 8.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 8.8
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 50.4 bits (115), Expect = 3e-07
Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 5/164 (3%)
Frame = -1
Query: 637 FIGVCVFSMEGVGATMAIENTMTEPKKVTXXXXXXXXXXXXXXXXXXXXGYWGYGELSKS 458
FIGV +F+ EG+ + I+ M +PK + Y +G K+
Sbjct: 460 FIGVAIFTYEGICLILPIQEQMAKPKNLPKLLTGVMAAISLLFISIGLLSYAAFGSKVKT 519
Query: 457 PVTLNFPWEPFPIALKVFMGLMIYVTFALNFWVPFDLVWYYLKKRHQPQKYWL-WERVY- 284
V LN P F + ++ + I ++ L + ++ + R + + W + Y
Sbjct: 520 VVILNMPESTFTVIIQFLYAIAILLSTPLQLFPAIAIIEQGIFTRSGKRNRKIKWRKNYL 579
Query: 283 RIIFVTGITLIAVTFPNISKL---TALIGSFCLSSMGFMYPAFI 161
R++ V I I +++ S+L +++GS C + +MYP +
Sbjct: 580 RVLIV--ILAILISWAGSSRLDLFVSMVGSVCCIPLIYMYPPML 621
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 28.7 bits (61), Expect = 0.95
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +3
Query: 465 DSSP*PQ*PKNPTAMTRTITTPIPPSNTAV-----TFFGSVIVFSIAIVAPTPSMLKTQT 629
+S P P PK A+T P+ S+++ +FFGS +A + P P +L+ T
Sbjct: 523 NSKPIPVDPKTGKALTNNPVPPVETSSSSGQNFFGSFFGSKNKKRLAAMEPPPPVLRAST 582
Query: 630 PMN 638
++
Sbjct: 583 TLS 585
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 489 PKNPTAMTRTITTPIPPSNTAVTFFGSVIVFSIAIVAPTPSMLKTQTPMNSN--RPGTVL 662
P T+ T T ++P+P ++T+ T S+ + TP++ T T S P +
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTS 323
Query: 663 KTGISN 680
TG S+
Sbjct: 324 STGTSS 329
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 489 PKNPTAMTRTITTPIPPSNTAVTFFGSVIVFSIAIVAPTPSMLKTQTPMNSN--RPGTVL 662
P T+ T T ++P+P ++T+ T S+ + TP++ T T S P +
Sbjct: 318 PPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTS 377
Query: 663 KTGISN 680
TG S+
Sbjct: 378 STGTSS 383
Score = 25.4 bits (53), Expect = 8.8
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +3
Query: 480 PQ*PKNPTAMTRTITTPIPPSNTAVTFFGSVIVFSIAIVAPT----PSMLKTQTPMNSNR 647
P P P T + +TP PP++T+ T S + S + T P + TP+
Sbjct: 354 PVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTV 413
Query: 648 PGTVLKTGIS 677
P T T ++
Sbjct: 414 PPTSSSTPLT 423
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 247 VTFPNISKLTALIGSFCLSSMGFMYPAFIELTLDWTDPGLGFLMWRMWK 101
+T P + L+G LSSM P L++D DP + M +WK
Sbjct: 247 ITIPEVFSHPFLMGCTSLSSMDSTTPPTPSLSIDEIDPLVVDCMCVLWK 295
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 308 VLAVGTSLQNNIRN--GNHLNSCDVSEYKQTNGFDRLIL 198
V AVG S+Q+ N HL +CD E +Q G DR L
Sbjct: 328 VQAVGGSIQSTCSNIEEKHLGTCDTFEERQIGG-DRFNL 365
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 221 NGFDRLILPIQHGLHVSSFH*THIGLDRP 135
NG L+LP+ GLH ++F TH D P
Sbjct: 369 NGERDLVLPMYRGLHKNAFA-THFASDGP 396
>SPBC14C8.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 27 ERALWHWYTCRQHRLPPPNNATMMHF 104
E +W T H+LP NA M HF
Sbjct: 25 ENIYLYWTTFDAHKLPNGGNADMAHF 50
>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 272 EYYSVDSFPQPILLGLVSLFQIIPNQIEGNPKV 370
EY D+ P+PIL F + PN + N ++
Sbjct: 81 EYPFTDNLPEPILPKFSGKFPLHPNNVNVNSEI 113
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 554 HFLRLRHCVFDSHCGSHPFHAEDTDPDELEQTWHRLED 667
HFL L H +S S PFH ++ + + WH +D
Sbjct: 73 HFLSLIHGSGNS-TRSPPFHLQNQKSNGQSEVWHSSDD 109
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 409 VFMGLMIYVTFALNFWVPFDLVW 341
+F+ L +YV F + +P D+ W
Sbjct: 91 IFVFLGLYVPFVVTLLIPIDVTW 113
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 344 NQIEGNPKVECKSHVYHQPHEYF 412
N+IE N ++ SH Y P E+F
Sbjct: 66 NEIETNEEMHVNSHDYAFPQEFF 88
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +3
Query: 489 PKNPTAMTRTITTPIPPSNTAVTFFGSVIVFSIAIVAPTPSMLKTQTPMNSNRPGTVLKT 668
P+ A +T PI P++ T G + P S+ K +TP N+++ T ++
Sbjct: 512 PQQMHATNTILTNPIDPNSNISTPVGMHLCTLPYTYQPFSSVEKIETPPNNSKNQTYRRS 571
Query: 669 GISNGLT 689
+ T
Sbjct: 572 SRGSNKT 578
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,354
Number of Sequences: 5004
Number of extensions: 70359
Number of successful extensions: 236
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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