Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14l13
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907 61 8e-10
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 52 5e-07
04_04_0819 - 28312667-28313219,28315157-28316430 46 3e-05
02_05_0264 + 27263562-27264830 46 4e-05
03_02_0338 + 7614199-7614450,7614518-7614703,7614815-7614927,761... 39 0.004
04_04_0795 - 28111155-28111649,28111747-28112405,28112499-281126... 38 0.009
11_01_0433 - 3323372-3324616,3324708-3324905 37 0.015
08_01_0185 + 1558580-1558755,1558848-1559737,1559828-1559919,156... 37 0.015
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283... 36 0.035
04_04_0140 - 23073032-23073130,23073270-23073338,23073448-230735... 33 0.19
07_01_0323 - 2264356-2264650,2265519-2266294 31 0.75
10_08_0001 + 13984436-13984514,13984804-13984926,13985181-139854... 31 0.99
12_02_0072 + 13218669-13218706,13218715-13218781,13220400-132204... 31 1.3
06_01_0218 + 1647624-1647757,1648044-1648112,1648493-1648549,164... 30 2.3
04_04_0195 - 23488490-23488891,23489016-23489243,23489348-234894... 30 2.3
10_02_0151 + 5895708-5895736,5896291-5896403,5897956-5898064,589... 29 3.0
06_03_0915 - 25929433-25930893 29 3.0
09_03_0165 + 12936028-12936398,12936807-12936810 29 4.0
06_03_0444 + 20864183-20864436,20864831-20865818 29 4.0
01_06_1736 + 39556376-39556523,39556651-39556745,39556867-395570... 29 4.0
01_06_1297 - 36095727-36095776,36096285-36097467 29 4.0
09_06_0066 + 20641144-20641459,20642899-20643290,20643379-206438... 29 5.3
07_01_0631 + 4714843-4715016,4715149-4715249,4715972-4716104,471... 29 5.3
05_04_0117 + 18136189-18137073,18137160-18137516 29 5.3
07_03_0463 - 18449908-18450171,18450718-18450810,18451170-184512... 28 7.0
02_05_0814 - 31970558-31971126,31971242-31971413 28 7.0
06_03_0810 - 24817268-24817350,24817547-24817697,24818441-248185... 28 9.2
04_03_0155 - 11960973-11961896 28 9.2
03_01_0585 - 4331111-4331850,4331960-4332224 28 9.2
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 28 9.2
>07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907
Length = 424
Score = 61.3 bits (142), Expect = 8e-10
Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Frame = -1
Query: 631 GVCVFSMEGVGATMAIENTMTEPKKVTXXXXXXXXXXXXXXXXXXXXGYWGYGELSKSPV 452
GV VF EG T+A+E++M E +K GY YGE +K +
Sbjct: 221 GVAVFCFEGFSMTLALESSMAERRKFRWVLSQAVVGIIIVYACFGVCGYLAYGEATKDII 280
Query: 451 TLNFPWEPFPIALKVFMGLMIYVTFALNFWVPFDLV-------WYYLKKRHQPQ-KYWLW 296
TLN P A+KV + + + TF + ++V + K H+ + W+
Sbjct: 281 TLNLPNSWSSAAVKVGLCIALVFTFPVMMHPIHEIVEERFQSSGCFPKLSHKVRGAEWVG 340
Query: 295 ERVYRIIFVTGITLIAVTFPNISKLTALIGSFCLSSMGFMYPAFIELTLDWTDPGLGFLM 116
RI+ VT ++++A P + +GS + + F+ P L++ G
Sbjct: 341 LHSSRIVMVTILSVVASFIPAFGSFISFVGSTVCALLSFVLPTIFHLSI----VGSSMSP 396
Query: 115 WRMWKCIIVALFGGG 71
WR W LFG G
Sbjct: 397 WRRWGDYGFLLFGLG 411
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 52.0 bits (119), Expect = 5e-07
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 5/166 (3%)
Frame = -1
Query: 631 GVCVFSMEGVGATMAIENTMTEPKKVTXXXXXXXXXXXXXXXXXXXXGYWGYGELSKSPV 452
GV VF EG T+A+E +M++ ++ GY YG++++ V
Sbjct: 222 GVAVFCFEGFCLTLALEASMSDRRRFRPVLLHAIAGVTAVYVCFGVCGYLAYGDVTRDIV 281
Query: 451 TLNFPWEPFPIALKVFMGLMIYVTFALNFWVPFDLVWYYLKKRHQPQK-YWLWER----V 287
TLN P A+K+ ++ V AL F V + ++ R P W +R
Sbjct: 282 TLNLPNNWSTAAVKI----VLCVALALTFPVMMHPIHEIVEARLFPSAGGWARKRAAVQA 337
Query: 286 YRIIFVTGITLIAVTFPNISKLTALIGSFCLSSMGFMYPAFIELTL 149
R+ V +T +A P + A +GS + + F+ PA L L
Sbjct: 338 SRVAVVGAVTAVACFVPAFGEFAAFVGSTVCALLSFVLPALFHLRL 383
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 46.0 bits (104), Expect = 3e-05
Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 2/170 (1%)
Frame = -1
Query: 634 IGVCVFSMEGVGATMAIENTMTEPKKVTXXXXXXXXXXXXXXXXXXXXGYWGYGELSKSP 455
+GV V++ EG+G + +E + +K GY +G ++
Sbjct: 230 LGVAVYAFEGIGMVLPLEAEAADKRKFGGTLALSMAFIAVMYGLFGAMGYLAFGAATRDI 289
Query: 454 VTLNFP--WEPFPIALKVFMGLMIYVTFALNFWVPFDLVWYYLKKRHQPQKYWLWERVYR 281
+T N W +++ V +GL I + F + V + V Y + +R +K + W +
Sbjct: 290 ITTNLGTGW----LSVTVQLGLCINLFFTMP--VMMNPV-YEVAERLLCRKRYAWWLRWL 342
Query: 280 IIFVTGITLIAVTFPNISKLTALIGSFCLSSMGFMYPAFIELTLDWTDPG 131
++ V G L+A+ PN + +L+GS +GF+ PA L + + G
Sbjct: 343 LVMVVG--LMAMLVPNFADFLSLVGSSVCVLLGFVLPAAFHLKVFGAEVG 390
>02_05_0264 + 27263562-27264830
Length = 422
Score = 45.6 bits (103), Expect = 4e-05
Identities = 39/160 (24%), Positives = 66/160 (41%)
Frame = -1
Query: 634 IGVCVFSMEGVGATMAIENTMTEPKKVTXXXXXXXXXXXXXXXXXXXXGYWGYGELSKSP 455
IGV V++ EG+G + +E KK GY +G+ ++
Sbjct: 227 IGVSVYAFEGIGMVLPLEAEAANKKKFGTTLGLSMGFIAVMYGLFGAMGYIAFGDATRDI 286
Query: 454 VTLNFPWEPFPIALKVFMGLMIYVTFALNFWVPFDLVWYYLKKRHQPQKYWLWERVYRII 275
+T N A++ +GL I + F + V V+ ++ ++Y W R +
Sbjct: 287 ITTNLGTGWLSAAVQ--LGLCINLFFTMP--VMMHPVYEVAERLLHGKRYCWW---LRWL 339
Query: 274 FVTGITLIAVTFPNISKLTALIGSFCLSSMGFMYPAFIEL 155
V + L A+ PN + AL+GS +GF+ PA L
Sbjct: 340 LVLAVGLSAMYVPNFTDFLALVGSSVCVLLGFVLPASFHL 379
>03_02_0338 +
7614199-7614450,7614518-7614703,7614815-7614927,
7615023-7615206,7615343-7615440,7616113-7616578,
7617342-7617683
Length = 546
Score = 39.1 bits (87), Expect = 0.004
Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 3/159 (1%)
Frame = -1
Query: 622 VFSMEGVGATMAIENTMTEPKKVTXXXXXXXXXXXXXXXXXXXXGYWGYGE--LSKSPVT 449
+++ G T+ I + M P+K YW +G+ L+ S
Sbjct: 268 LYTFGGHAVTVEIMHAMWRPQKFKAIYLMATLYVLTLTLPSAASVYWAFGDELLTHSNAL 327
Query: 448 LNFPWEPFPIALKVFMGLMIYVTFALNFWVPFDLVWYYLKKRHQPQKYWLWERVY-RIIF 272
P F A V M + ++TF P VW L H + L++R R+
Sbjct: 328 ALLPRTAFRDAAVVLMLIHQFITFGFAC-TPLYFVWEKLIGLHDCRS--LFKRAAARLPV 384
Query: 271 VTGITLIAVTFPNISKLTALIGSFCLSSMGFMYPAFIEL 155
V I +A+ FP + + +GS +S ++ PA +
Sbjct: 385 VVPIWFLAIIFPFFGPINSAVGSLLVSFTVYIIPALAHM 423
>04_04_0795 -
28111155-28111649,28111747-28112405,28112499-28112635,
28112747-28113093
Length = 545
Score = 37.9 bits (84), Expect = 0.009
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = -1
Query: 337 YLKKRHQPQKYWLWERVYRIIFVTGITLIAVTFPNISKLTALIGSFCLSSMGFMYPAFIE 158
Y+ K+++P +W+ +R +F LIAV P +S+L L+G L + YP F+
Sbjct: 434 YVHKKNRPCPWWM-RAGFRALFGAINLLIAVALPFLSELAGLLGGISL-PVTLAYPCFMW 491
Query: 157 LTLDWTDPGLGFLMW 113
+ + P G MW
Sbjct: 492 VAI--MRPAKGTAMW 504
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 37.1 bits (82), Expect = 0.015
Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 2/158 (1%)
Frame = -1
Query: 622 VFSMEGVGATMAIENTMTEPKKVTXXXXXXXXXXXXXXXXXXXXGYWGYGE--LSKSPVT 449
+++ G T+ I + M P++ YW +G+ L S
Sbjct: 252 LYTFGGHAVTVEIMHAMWRPRRFKMIYLAATAYVLTLTLPSAAAMYWAFGDALLDHSNAF 311
Query: 448 LNFPWEPFPIALKVFMGLMIYVTFALNFWVPFDLVWYYLKKRHQPQKYWLWERVYRIIFV 269
P P+ A V M + ++TF P VW H L R+ V
Sbjct: 312 ALLPRTPWRDAAVVLMLIHQFITFGFAC-TPLYFVWEKAIGVHGGAGV-LRRAAARLPVV 369
Query: 268 TGITLIAVTFPNISKLTALIGSFCLSSMGFMYPAFIEL 155
I +AV FP + + +GSF +S ++ PA +
Sbjct: 370 LPIWFLAVIFPFFGPINSTVGSFLVSFTVYIIPAMAHM 407
>08_01_0185 +
1558580-1558755,1558848-1559737,1559828-1559919,
1560018-1560086,1560218-1560316
Length = 441
Score = 37.1 bits (82), Expect = 0.015
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 3/138 (2%)
Frame = -1
Query: 487 YWGYGELSKSPVTLNFPWEPFPIALKVFMGLMIYVTFALNFW-VP-FDLVWYYLKKRHQP 314
YW +G + + + IAL M ++I+V + + +P FD++ L K+ +
Sbjct: 282 YWAFGNHVDDNILITLSRPKWLIALANMM-VVIHVIGSYQIYAMPVFDMIETVLVKKLRF 340
Query: 313 QKYWLWERVYRIIFVTGITLIAVTFPNISKLTALIGSFCLSSMGFMYPAFIELTLDWTDP 134
+ R ++V IA+TFP L G F + + P + L + P
Sbjct: 341 PPGLTLRLIARTLYVAFTMFIAITFPFFGGLLGFFGGFAFAPTTYFLPCIMWLAI--YKP 398
Query: 133 GLGFLMW-RMWKCIIVAL 83
L W W CII+ +
Sbjct: 399 RRFSLSWFTNWICIILGV 416
>10_01_0267 -
2828966-2829340,2831164-2831629,2833390-2833487,
2833782-2834078,2834287-2834694
Length = 547
Score = 35.9 bits (79), Expect = 0.035
Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 3/155 (1%)
Frame = -1
Query: 622 VFSMEGVGATMAIENTMTEPKKVTXXXXXXXXXXXXXXXXXXXXGYWGYGE--LSKSPVT 449
+++ G T+ I + M P+K YW +G+ L+ S
Sbjct: 258 LYTFGGHAVTVEIMHAMWRPQKFKAIYLLATVYVLTLTLPSASAAYWAFGDALLTHSNAL 317
Query: 448 LNFPWEPFPIALKVFMGLMIYVTFALNFWVPFDLVWYYLKKRHQPQKYWLWERVY-RIIF 272
P P+ A V M + ++TF P VW L H L +R R+
Sbjct: 318 ALLPRTPWRDAAVVLMLIHQFITFGFAC-TPLYFVWEKLVGLHGCPS--LCKRAAARLPV 374
Query: 271 VTGITLIAVTFPNISKLTALIGSFCLSSMGFMYPA 167
V I +A+ FP + + +GS +S ++ P+
Sbjct: 375 VLPIWFLAIIFPFFGPINSAVGSLLVSFTVYIIPS 409
>04_04_0140 -
23073032-23073130,23073270-23073338,23073448-23073539,
23073637-23074550,23074646-23074779,23075003-23075058,
23077556-23077646
Length = 484
Score = 33.5 bits (73), Expect = 0.19
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 2/137 (1%)
Frame = -1
Query: 487 YWGYGELSKSPVTLNFPWEPFPIALKVFMGLMIYVTFALNFW-VP-FDLVWYYLKKRHQP 314
YW +G V + P+ +A M ++++V + + +P F+ + L R +
Sbjct: 325 YWAFGRDVSDNVLVALRRPPWLVAAANMM-VVVHVLGSYQVYAMPIFETLETILITRIRL 383
Query: 313 QKYWLWERVYRIIFVTGITLIAVTFPNISKLTALIGSFCLSSMGFMYPAFIELTLDWTDP 134
L V R +V +AVTFP L G F + + P + L + P
Sbjct: 384 PPGALLRLVARSAYVAFTLFVAVTFPFFGDLLGFFGGFGFTPTSYFLPCILWLKIK-KPP 442
Query: 133 GLGFLMWRMWKCIIVAL 83
+ W CI+V +
Sbjct: 443 RFSASWFANWGCIVVGV 459
>07_01_0323 - 2264356-2264650,2265519-2266294
Length = 356
Score = 31.5 bits (68), Expect = 0.75
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 481 GYGELSKSPVTLN-FPWE-PFPIALKVFMGLMIYVTFALNFWVPF 353
G ++ K V +N W PF L +F+G+++ V A+ F +PF
Sbjct: 261 GAADMDKIKVMMNQLRWSIPFTTGLGLFVGVVVTVVLAIKFGIPF 305
>10_08_0001 +
13984436-13984514,13984804-13984926,13985181-13985468,
13985560-13985690,13985764-13985979,13986059-13986442
Length = 406
Score = 31.1 bits (67), Expect = 0.99
Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 3/146 (2%)
Frame = -1
Query: 487 YWGYGELSKSPVTLNFPWEPFPIAL-KVFMGLMIYVTFALNFWVPFDLVWYYLKKRHQPQ 311
YW +G + + + + + I + +F + I F + F ++ +
Sbjct: 241 YWAFGSGVQPYILSSLTFPRWTIVMANLFAVIQITGCFQIYCRPTFAQFEQRIQAKDAGY 300
Query: 310 KYWLWERVYRIIFVTGITLIAVTFPNISKLTALIGSFCLSSMGFMYP--AFIELTLDWTD 137
+ +W VY ++ ITLI+ P ++ G+ + + F+ P AF++ +
Sbjct: 301 RARMWRLVYTSAYMVVITLISAAMPFFGDFVSVCGAVGFTPLDFVLPALAFLKAGKLPEN 360
Query: 136 PGLGFLMWRMWKCIIVALFGGGNLCC 59
PGL + + + V G L C
Sbjct: 361 PGLRHAVKVITSAVAVLFSIVGALAC 386
>12_02_0072 +
13218669-13218706,13218715-13218781,13220400-13220471,
13222107-13222182,13222309-13222943
Length = 295
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -3
Query: 677 GDARLQDGARSVRVHRGLCLQHGRGGSHNGYRKHNDGAEESDGGITWRDGRRDG 516
GD + ++G + G + G GG G +K +G +E DGG +DG DG
Sbjct: 157 GDGKKEEGGDGKKEGEGK--KEGDGG---GDKKEGEGKKEGDGGGDKKDGNGDG 205
>06_01_0218 +
1647624-1647757,1648044-1648112,1648493-1648549,
1648768-1648934,1649661-1649716,1650319-1650490,
1650747-1650810,1651037-1651119,1651243-1651334,
1652028-1652134,1652398-1652461,1652630-1652770
Length = 401
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 305 LAVGTSLQNNIRNGNHLNSCDVSEYKQTNGFDRLILPIQHGLHVSSFH*THIGLDR 138
+A T L N I + SC E ++ R I PI+ L ++F TH+GL R
Sbjct: 56 VAASTRLGNKIISQGRDGSCKCWEIEEAGLSRRDIQPIKRSLCKTTFTPTHVGLIR 111
>04_04_0195 -
23488490-23488891,23489016-23489243,23489348-23489481,
23489685-23489899,23490049-23490142,23490293-23490526,
23490643-23490736
Length = 466
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = -1
Query: 286 YRIIFVTGITLIAVTFPNISKLTALIGSFCLSSMGFMYPA---FIELTLDWTDPGLGFLM 116
+R ++V T +A+ FP +++ AL+G+ + +P FI+ + P L
Sbjct: 380 FRTVYVASTTAVALAFPYFNEVLALLGALNFWPLAIYFPVEMYFIQRHVPRWSPRWVVLQ 439
Query: 115 WRMWKCIIVALF 80
C++V+ F
Sbjct: 440 SFSVLCLLVSAF 451
>10_02_0151 +
5895708-5895736,5896291-5896403,5897956-5898064,
5898580-5898658,5898747-5898863,5900001-5900138
Length = 194
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 320 VSLFQIIPNQIEGNPKVECKSHVYH 394
V FQ+ P+ PKV+CK+ VYH
Sbjct: 89 VFTFQVSPSYPHEPPKVKCKTKVYH 113
>06_03_0915 - 25929433-25930893
Length = 486
Score = 29.5 bits (63), Expect = 3.0
Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Frame = -1
Query: 487 YWGYGELSKSPVTLNFPWEPFPIALKVFMGLMIYVTFALNFWVPFDLVWYYLKKRHQPQK 308
Y +GE ++S V NF + I + ++ + + ++ + F +V + L++
Sbjct: 326 YLLFGEDTESDVLTNFD-KDLGIRFSSILNFIVRIGYVIHLVLVFPVVHFSLRQTVDSLI 384
Query: 307 YW-LWERVYRIIFVTGITLIAVTF------PNISKLTALIGSFCLSSMGFMYPAFIELTL 149
+ L + + + L+A+ + PNI G+ ++GF++PA I L L
Sbjct: 385 FGELAPHSRKKMLTLTVVLLALIYLGSTMIPNIWVAFKFTGATTGLALGFIFPALIALRL 444
Query: 148 DWTDPGLG 125
D LG
Sbjct: 445 DKEGKSLG 452
>09_03_0165 + 12936028-12936398,12936807-12936810
Length = 124
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = -3
Query: 656 GARSVRVHRGLCLQHGRGGSHNGYRKHNDGAEESDGGITWRDGRRDG 516
GA + R+ +G Q G GG H R H EES GG + + G R G
Sbjct: 57 GAPAQRLDQG---QVGEGGRHAQCRLHRQ-EEESRGGSSMKGGGRQG 99
>06_03_0444 + 20864183-20864436,20864831-20865818
Length = 413
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 289 VYRIIFVTGITLIAVTFPNISKLTALIGSFCLSSMGFMYP 170
V+R FV ITL+A+ P + + ++GS + +P
Sbjct: 318 VWRTAFVAVITLLAILMPFFNSILGILGSIAFWPLTVFFP 357
>01_06_1736 +
39556376-39556523,39556651-39556745,39556867-39557059,
39557468-39557808,39558213-39558443,39558537-39558689
Length = 386
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 253 IAVTFPNISKLTALIGSFCLSSMGFMYPAFIELTLDWTD-PGLGFLMWRMWKCIIVA 86
+ FP + L GSF L + FM+P+ + L + D G +W W I+ +
Sbjct: 303 VTALFPFMGDFVNLFGSFVLFPLTFMFPSMVVLKIKGKDEAGRWNRIWH-WGIIVAS 358
>01_06_1297 - 36095727-36095776,36096285-36097467
Length = 410
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 51 TCRQHRLPPPNNATMMHFHILHIKNPRPGSVQSNVSSMK 167
T R LP AT++ FH+LH P GS++S V+ ++
Sbjct: 254 TDRLQSLPADRKATVLRFHVLHSYYPL-GSLESIVNPVQ 291
>09_06_0066 +
20641144-20641459,20642899-20643290,20643379-20643829,
20643985-20644046
Length = 406
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 644 QTWHRLEDGHLQRTDGRVFW 703
+TW RL+D HL D V W
Sbjct: 362 KTWKRLDDPHLTTIDSEVLW 381
>07_01_0631 +
4714843-4715016,4715149-4715249,4715972-4716104,
4716471-4716562,4716857-4716956,4717044-4717116,
4717198-4717318,4717778-4717897,4718643-4718733,
4718811-4718839,4719061-4719131,4719217-4719395
Length = 427
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -1
Query: 484 WGYGELSKSPVTLNFP-WEPFPIALKVFMGLMIYVTFALNFWVPFDLVWYYLKKRHQPQK 308
WG EL+K V ++ W+ + I L +F L+ + F + F+ D W + +HQP K
Sbjct: 354 WG-AELTKLNVPADWKEWQVWLILLSLF--LVSAILFYM-FYERSDSFWNFPMGQHQPAK 409
Query: 307 YW 302
W
Sbjct: 410 PW 411
>05_04_0117 + 18136189-18137073,18137160-18137516
Length = 413
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +1
Query: 283 CRLVPTANTSGVGVSFSDNTKPDRREPKS 369
CRL P S F D P+R EP S
Sbjct: 228 CRLAPVKERSRTAFEFDDKHDPNREEPDS 256
>07_03_0463 -
18449908-18450171,18450718-18450810,18451170-18451254,
18451607-18451705,18452099-18452238,18453036-18453482
Length = 375
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 617 QHGRGGSHNGYRKHNDGAEESDGG 546
QHG GG +G K DG EE GG
Sbjct: 68 QHGGGGDGDGDGKGVDGDEEGGGG 91
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 28.3 bits (60), Expect = 7.0
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Frame = +3
Query: 414 SAIGNGSQGKFSVTGDLDSSP*PQ*PKNPTAMTRTITTPIPPSNTAVTFFGSVIVFSIAI 593
S+ +G G G SSP P P T T TTP P + T + S + +
Sbjct: 127 SSSSSGGGGGGGGGGSTPSSPSSPTPTTPNPSTPTPTTPYPSTPMPTTPYPSTPMTTPTT 186
Query: 594 VAPTPSMLKTQ-----TPMNSNRPGTV 659
TP+ TP+ PGTV
Sbjct: 187 PYTTPTSPACSGGAGATPVTPVTPGTV 213
>06_03_0810 - 24817268-24817350,24817547-24817697,24818441-24818542,
24818722-24818802,24818900-24819020,24819284-24819401,
24819514-24819637,24819898-24819963,24820117-24820407,
24820455-24820592,24820967-24821116,24821240-24821410,
24821543-24821746,24821880-24822104,24822461-24822595,
24822995-24823096,24823586-24823882,24823979-24824167,
24824581-24824628,24824872-24825070,24825501-24825730,
24826373-24826568,24826695-24826882
Length = 1202
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 403 MGLMIYVTFALNFWVPFDLVWYYLKKRHQPQK 308
MGL V+F LN + DL WY + P K
Sbjct: 1033 MGLTYDVSFELNLFDKLDLGWYVIAVTSTPSK 1064
>04_03_0155 - 11960973-11961896
Length = 307
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +1
Query: 283 CRLVPTANTSGVGVSFSDNTKPDRREPKS 369
CRL P S F N P+R EP S
Sbjct: 228 CRLAPIKERSRAAFEFDGNHDPNREEPDS 256
>03_01_0585 - 4331111-4331850,4331960-4332224
Length = 334
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 534 PPSNTAVTFFGSVIVFSIAIVAPTPSMLKTQT 629
PP+ TA+ FF + V AP P+M+ T +
Sbjct: 206 PPAETALPFFTNGFVDLTTAAAPPPAMMMTSS 237
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 626 LCLQHGRGGSHNGYRKHNDGAEESDGGITWRDGRRD 519
L HG GG ++G +N+G + +G D RR+
Sbjct: 69 LAFSHGGGGDNDGDDNNNNGGGDGEGDGGAPDNRRE 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,832,233
Number of Sequences: 37544
Number of extensions: 492804
Number of successful extensions: 1563
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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