Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14l13
(757 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 26 0.44
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 1.0
DQ435326-1|ABD92641.1| 132|Apis mellifera OBP9 protein. 23 4.1
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 22 5.4
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 22 7.1
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 7.1
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 21 9.4
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 21 9.4
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 21 9.4
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 25.8 bits (54), Expect = 0.44
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = -3
Query: 734 IVTVATVYYGTKTRDRQSVGDARLQDGARSVRVHRGLCLQHGRGGSHNGYRKHNDGAEES 555
+ T + G +T + +R + ++R+HRG RG HNG + + ES
Sbjct: 275 VSTTKAINQGFRTTKSSKMFGSRFDEERLTLRIHRG------RGSVHNGSNNGSPRSPES 328
Query: 554 D 552
+
Sbjct: 329 N 329
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 262 ITLIAVTFPNISKLTALIGSFCLSSMGFMYPAFIELTL 149
+ L+A T P +S L+GS+ + + FM + + LT+
Sbjct: 240 LNLVAETLPQVSDAIPLLGSY-FNCIMFMVASSVVLTV 276
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 262 ITLIAVTFPNISKLTALIGSFCLSSMGFMYPAFIELTL 149
+ L+A T P +S L+GS+ + + FM + + LT+
Sbjct: 240 LNLVAETLPQVSDAIPLLGSY-FNCIMFMVASSVVLTV 276
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 262 ITLIAVTFPNISKLTALIGSFCLSSMGFMYPAFIELTL 149
+ L+A T P +S L+GS+ + + FM + + LT+
Sbjct: 240 LNLVAETLPQVSDAIPLLGSY-FNCIMFMVASSVVLTV 276
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.6 bits (51), Expect = 1.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 262 ITLIAVTFPNISKLTALIGSFCLSSMGFMYPAFIELTL 149
+ L+A T P +S L+GS+ + + FM + + LT+
Sbjct: 308 LNLVAETLPQVSDAIPLLGSY-FNCIMFMVASSVVLTV 344
>DQ435326-1|ABD92641.1| 132|Apis mellifera OBP9 protein.
Length = 132
Score = 22.6 bits (46), Expect = 4.1
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -3
Query: 746 FFILIVTVATVYYG 705
FFIL++T+ +Y+G
Sbjct: 8 FFILVITLIFLYFG 21
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 22.2 bits (45), Expect = 5.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 289 VYRIIFVTGITLIAVTFPNISKLTALI 209
+Y IIFVTGI F NI+ T +I
Sbjct: 46 IYMIIFVTGI------FGNITTCTVII 66
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -1
Query: 127 GFLMWRMWKCIIVALFGGGNLC 62
G ++R W+ IIV + G C
Sbjct: 302 GCFLFRAWESIIVGMIGAFITC 323
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.8 bits (44), Expect = 7.1
Identities = 6/22 (27%), Positives = 12/22 (54%)
Frame = +3
Query: 27 ERALWHWYTCRQHRLPPPNNAT 92
E+ WH + C Q+++ + T
Sbjct: 603 EQCCWHCFNCTQYQIRDHKDVT 624
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 21.4 bits (43), Expect = 9.4
Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 120 KNPRPGSVQSNVSSMKAGYMKPMLDR---QNEPIKAVSLLIFG 239
KNP+P + ++ +K+G + ++D+ + PI +++ I G
Sbjct: 30 KNPQPKNAVCALNELKSGAVYKVVDQTGPTHAPIFTIAVQIDG 72
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 21.4 bits (43), Expect = 9.4
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = +3
Query: 129 RPGSVQSNVSSMKAGY 176
+PGS+ N++ ++GY
Sbjct: 389 KPGSIIENIAHTRSGY 404
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 21.4 bits (43), Expect = 9.4
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 72 PPPNNATMMHFHILHIKNPRPGSVQ-SNVSSMK 167
P P +AT++ I H+++P S N S+K
Sbjct: 298 PTPPSATLVGTTITHLRDPDHHSTDIQNCDSVK 330
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,436
Number of Sequences: 438
Number of extensions: 4888
Number of successful extensions: 19
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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