Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14l12
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 31 0.18
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 30 0.23
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 30 0.23
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 29 0.41
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 28 1.2
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 27 2.2
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|... 26 3.8
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 26 3.8
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.0
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 6.6
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M... 25 6.6
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 8.8
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.8
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 30.7 bits (66), Expect = 0.18
Identities = 11/33 (33%), Positives = 24/33 (72%)
Frame = +3
Query: 156 FVLLLVSNTLWSV*NEIDVSYMDEVISIAPSDV 254
F+++L+SNTL+ +E+D S ++ ++S+ D+
Sbjct: 207 FLVVLLSNTLYDSIDELDFSVLNSIVSLDAKDI 239
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 30.3 bits (65), Expect = 0.23
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 295 PLPMETSMDSYHISTSLGAMEMTSSMYDTSISFYTDHNVFETSS-KTKRSFF 143
PL D ++ST E TS Y TS+S Y + ETSS KTK S F
Sbjct: 345 PLRKIYDTDIKNVSTKKKDFEETSRDYYTSLSRYLSKSEKETSSDKTKESKF 396
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 30.3 bits (65), Expect = 0.23
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -1
Query: 316 KIPTNPSPLPMETSMDSYHISTSLGAMEMTSSMYDT 209
K P PSPL + D YH +GA E YDT
Sbjct: 238 KQPNLPSPLSLHFHQDYYHNLHRVGAFEPFDPYYDT 273
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 29.5 bits (63), Expect = 0.41
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 276 DVSIGNGDGFVGILICEIFDRITRQDINLLKNGRLFSSFSI-LNGSIKFLTDVVSGSIAS 452
D +G+G V I+ E+ R N + + + + + + ++KF+TDV+S S+ S
Sbjct: 88 DKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSVDS 147
Query: 453 ESNE 464
E
Sbjct: 148 LGKE 151
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -1
Query: 307 TNPSPLPMETSMDSYHISTSLGAMEMTSSMYDTSISFYTDHNVFETSSKTKRS 149
T +P P S + TS G ++ DT+ S T HN F+ T RS
Sbjct: 707 TEEAPKPEVDSTPRFPSFTSNGITTDKPTLPDTTSSVPTQHNSFDAMHNTLRS 759
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 337 RSKISQIKIPTNPSPLPMETSMDSYHISTSLGAMEMTSSMYDTSIS 200
RS ++Q K+P + P+ +E D Y + S T ++YD IS
Sbjct: 129 RSNLAQSKLPVDLVPIRLEIDADRYKLRDS-----FTWNLYDKCIS 169
>SPCC11E10.04 |||mitochondrial ATPase expression protein
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 443
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 220 MYDTSISFYTDHNVFETSSKTKRSFFNSVRGFLTNRKS 107
+YDTSI FY H F K S+ G L + +
Sbjct: 353 IYDTSIKFYMKHGRFGLLEKVCESWTKQFLGSLEKQNN 390
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 208 SISFYTDHNVFETSSKTKRSFFNSVRGFL 122
S S YTD+N + + KRSFF S R L
Sbjct: 500 SSSSYTDNNKQKEPLEEKRSFFPSFRSSL 528
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -3
Query: 557 LVELYS*KGFNSNSIQRLEKI 495
L ELYS G SNS Q +EKI
Sbjct: 404 LKELYSVSGMKSNSSQVMEKI 424
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -1
Query: 592 VSFSSTKINSLHSSNFIVKKDSIQTLFRGWRKSPTPNLGTSAYSLDSEAIEPLTT 428
++F T +NSL SSN + S +G +K+PT N + S + ++ + T
Sbjct: 116 IAFQLT-VNSLSSSNQLSVIRSSTNTVKGRKKNPTTNSNWNGISHVNALLDAIIT 169
>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 451 EAIEPLTTSVRNLMEPFKIEKEENR 377
E ++PL + +EPF I++E +R
Sbjct: 247 EQLQPLILNETTFVEPFSIDRESHR 271
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 8.8
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 3/145 (2%)
Frame = -1
Query: 589 SFSSTKINSLHSSNFIVKKDSIQT-LFRGWRKSPTPNLGTSAYSLDSEAIEPLTTS-VRN 416
SFS+ + S S++ + I + + SPT ++ T++ S+ S + +TTS V+
Sbjct: 346 SFSTVRSTSSSSTDQLTSASPISSSVISPSVSSPTSSILTNSGSIKSGDHQIVTTSFVQT 405
Query: 415 LMEPFKIEKEENRRPFFKRLMSCLVMRSKISQIKIPT-NPSPLPMETSMDSYHISTSLGA 239
++E + L ++ + S + T PSP + ++ I +S
Sbjct: 406 TTHGSQVET----LTYVTTLTETILTTTYDSHTFLTTITPSPSNSISYTNNTFIPSSSIK 461
Query: 238 MEMTSSMYDTSISFYTDHNVFETSS 164
+ S+ TS YT F TSS
Sbjct: 462 SSIVYSVTPTSAENYTSSEAFSTSS 486
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -1
Query: 598 QNVSFSSTKINSLHSSNFIVKKDSIQTLFRGWRKSPTPNLGTS 470
+ F+ + ++ S N + S +RGW SPTP G +
Sbjct: 285 EEYGFNPNQPSNFRSPN---RAPSTNNRYRGWNGSPTPAAGNN 324
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,877
Number of Sequences: 5004
Number of extensions: 47331
Number of successful extensions: 145
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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