Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l12
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0576 + 19638725-19638779,19638988-19639144,19639871-196401...    31   0.73 
01_06_1462 + 37530509-37530874,37531012-37531099,37531352-375314...    30   1.3  
08_02_0636 + 19567654-19568859                                         29   2.2  
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583...    27   9.0  

>07_03_0576 +
           19638725-19638779,19638988-19639144,19639871-19640113,
           19640267-19640801,19640897-19641054,19641194-19641626
          Length = 526

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 140 IKEASFCFTASFEHVVVGVERNRRVIHGRSHFHCTERRTNVIRIHRCF 283
           I E ++   AS +H   GV+ N    H    F    R +N  R+ RCF
Sbjct: 232 ITEGNYLLEASLKHKNYGVDDNPEKAHDPETFFKYYRHSNCHRLDRCF 279


>01_06_1462 +
           37530509-37530874,37531012-37531099,37531352-37531484,
           37531567-37532326
          Length = 448

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 8/146 (5%)
 Frame = -1

Query: 616 YSVSCKQ-NVSFSS-TKINSLHSSNFIVKKDSIQTLFRGWRKSPTPNLGTSAYSLDSEAI 443
           Y++S    N+S SS T I  L S NF+  K  I      +  +  P++G ++   +S  +
Sbjct: 175 YTISMVSGNISRSSRTNIGKLRS-NFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKV 233

Query: 442 EPLTTSVR-NLME-PFKIEKEENRRPFFKRLMSCLVMRSKISQIK----IPTNPSPLPME 281
            P   SV  N+ +  +++     R P   R M C++     S ++    +P  P  +   
Sbjct: 234 SPKVPSVTYNIAQVSYELNVLGTRGP---RRMRCMMHSIPASSVEPGGIVPGQPEQIVPR 290

Query: 280 TSMDSYHISTSLGAMEMTSSMYDTSI 203
              DS+  +TS      +++ +  SI
Sbjct: 291 ALEDSFRSTTSFSQSFRSTTSFSKSI 316


>08_02_0636 + 19567654-19568859
          Length = 401

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 301 PSPLPMETSMDSYHISTSLGAMEMTSSMYDTSISFYTD 188
           PS +P+ TS+D+  IS+     ++ SS    S SF+T+
Sbjct: 194 PSSVPITTSLDASSISSPTYVNDVPSSTKPISASFFTE 231


>12_02_0133 -
           14057469-14057497,14057516-14057581,14057770-14058363,
           14058450-14058570,14058926-14059320,14059410-14059534,
           14059646-14059876,14060012-14060484,14060587-14060693,
           14060842-14061172,14061222-14061250,14061345-14061901,
           14062170-14062255,14062344-14062406,14062646-14063001,
           14063101-14063356
          Length = 1272

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -1

Query: 379 RRPFFKRLMSCLVMRSKISQIKIPTNPSPL---PMETSMDSYHISTSLGAMEMTSSM 218
           + PFFK+  SC       S I  PT  S +   P+  ++ S   ++ LG   +T+SM
Sbjct: 486 KSPFFKKPKSCESANKAKSSILPPTEESKVVNPPVSHNVTSDRDTSILGCPSVTASM 542


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,899,303
Number of Sequences: 37544
Number of extensions: 263498
Number of successful extensions: 614
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)