Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l12
         (619 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC092412-1|AAH92412.1| 1265|Homo sapiens shugoshin-like 2 (S. po...    31   3.3  
AY094614-1|AAM21971.1| 1265|Homo sapiens tripin protein.               31   3.3  
AK057940-1|BAB71617.1|  568|Homo sapiens protein ( Homo sapiens ...    31   3.3  
AC080164-1|AAY24264.1| 1103|Homo sapiens unknown protein.              31   3.3  
AF447582-1|AAL60204.1|  166|Homo sapiens HLCDGP1 protein.              30   7.5  

>BC092412-1|AAH92412.1| 1265|Homo sapiens shugoshin-like 2 (S. pombe)
            protein.
          Length = 1265

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 613  SVSCKQNVSFSSTKINSLHSSNFIVKKDSIQT-LFRGWRKSPTPNLGTSAYSLDSEAIEP 437
            SV  K  VS  + K N+L +   +  K    T  FR   +  +PN+  S++    E + P
Sbjct: 1102 SVQGKSTVSEQADKENNLENEKMVKNKPDFYTKAFRSLSEIHSPNIQDSSFDSVREGLVP 1161

Query: 436  LTTS 425
            L+ S
Sbjct: 1162 LSVS 1165


>AY094614-1|AAM21971.1| 1265|Homo sapiens tripin protein.
          Length = 1265

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 613  SVSCKQNVSFSSTKINSLHSSNFIVKKDSIQT-LFRGWRKSPTPNLGTSAYSLDSEAIEP 437
            SV  K  VS  + K N+L +   +  K    T  FR   +  +PN+  S++    E + P
Sbjct: 1102 SVQGKSTVSEQADKENNLENEKMVKNKPDFYTKAFRSLSEIHSPNIQDSSFDSVREGLVP 1161

Query: 436  LTTS 425
            L+ S
Sbjct: 1162 LSVS 1165


>AK057940-1|BAB71617.1|  568|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25211 fis, clone REC08060. ).
          Length = 568

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 613 SVSCKQNVSFSSTKINSLHSSNFIVKKDSIQT-LFRGWRKSPTPNLGTSAYSLDSEAIEP 437
           SV  K  VS  + K N+L +   +  K    T  FR   +  +PN+  S++    E + P
Sbjct: 405 SVQGKSTVSEQADKENNLENEKMVKNKPDFYTKAFRSLSEIHSPNIQDSSFDSVREGLVP 464

Query: 436 LTTS 425
           L+ S
Sbjct: 465 LSVS 468


>AC080164-1|AAY24264.1| 1103|Homo sapiens unknown protein.
          Length = 1103

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 613  SVSCKQNVSFSSTKINSLHSSNFIVKKDSIQT-LFRGWRKSPTPNLGTSAYSLDSEAIEP 437
            SV  K  VS  + K N+L +   +  K    T  FR   +  +PN+  S++    E + P
Sbjct: 944  SVQGKSTVSEQADKENNLENEKMVKNKPDFYTKAFRSLSEIHSPNIQDSSFDSVREGLVP 1003

Query: 436  LTTS 425
            L+ S
Sbjct: 1004 LSVS 1007


>AF447582-1|AAL60204.1|  166|Homo sapiens HLCDGP1 protein.
          Length = 166

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 220 MYDTSISFYTDHN--VFETSSKTKRSFFNSVRGFLTNRK 110
           +YD    FY +    +F +S KTK  F   +R FL N+K
Sbjct: 37  LYDLGFCFYFEMGAFLFTSSLKTKNCFCKEMRFFLNNKK 75


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,276,035
Number of Sequences: 237096
Number of extensions: 1445857
Number of successful extensions: 3183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3181
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)