Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l12
         (619 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1144|AAF46343.1|  600|Drosophila melanogaster CG2278-PA...    30   2.9  
AY069373-1|AAL39518.1|  336|Drosophila melanogaster LD07939p pro...    29   3.8  
AE014297-3751|AAF56432.1|  336|Drosophila melanogaster CG10425-P...    29   3.8  

>AE014298-1144|AAF46343.1|  600|Drosophila melanogaster CG2278-PA
           protein.
          Length = 600

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = -1

Query: 334 SKISQIKIPTNPSPLPMETSMDSYHISTSLGAMEMTSSMYDTSISFYTDHN 182
           S  SQ   PTNP+P    TS DS ++S   G++    S    S   Y D N
Sbjct: 502 STSSQQGTPTNPTPPDSLTSDDSSYLSAKEGSIGSQHSRVRFSPEAYLDAN 552


>AY069373-1|AAL39518.1|  336|Drosophila melanogaster LD07939p
           protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = +3

Query: 309 GILICEIFDRITRQDINLLKNGRLFSSFSILNGSIKFLTDVVSGSIASESNE*ADVPRFG 488
           G+ IC +F+ ++ QD++ L N   F +++     +  +     G I   +++ A    +G
Sbjct: 126 GMAICGVFEEVSVQDVHKLMNVNFFGTYNCTRYVLPKMKKAGDGIIVITASQAAMFGIYG 185

Query: 489 VGDF 500
            G +
Sbjct: 186 YGPY 189


>AE014297-3751|AAF56432.1|  336|Drosophila melanogaster CG10425-PA
           protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = +3

Query: 309 GILICEIFDRITRQDINLLKNGRLFSSFSILNGSIKFLTDVVSGSIASESNE*ADVPRFG 488
           G+ IC +F+ ++ QD++ L N   F +++     +  +     G I   +++ A    +G
Sbjct: 126 GMAICGVFEEVSVQDVHKLMNVNFFGTYNCTRYVLPKMKKAGDGIIVITASQAAMFGIYG 185

Query: 489 VGDF 500
            G +
Sbjct: 186 YGPY 189


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,060,572
Number of Sequences: 53049
Number of extensions: 475546
Number of successful extensions: 1265
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)