Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l12
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79598-2|CAB01864.1|  738|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z79598-2|CAB01864.1|  738|Caenorhabditis elegans Hypothetical
           protein C44H4.2 protein.
          Length = 738

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 595 NVSFSSTKINSLHSSNFIVKKDSIQTLFRG 506
           +++  S KI S+H+S F   K+SIQT+  G
Sbjct: 128 DINLGSNKIFSIHTSTFQNVKNSIQTINLG 157


>Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical
           protein K08E7.5c protein.
          Length = 896

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 334 SKISQIKIPTNPSPLPMETSMDSYHISTSLGAMEMTS 224
           +K S +  P  P+P P E+S  ++H+STS   +E +S
Sbjct: 247 TKYSTLNSP--PAPSPQESSTITHHVSTSPDFLEPSS 281


>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
           protein K08E7.5a protein.
          Length = 1221

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 334 SKISQIKIPTNPSPLPMETSMDSYHISTSLGAMEMTS 224
           +K S +  P  P+P P E+S  ++H+STS   +E +S
Sbjct: 572 TKYSTLNSP--PAPSPQESSTITHHVSTSPDFLEPSS 606


>U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical
           protein K09H11.3 protein.
          Length = 1085

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/75 (24%), Positives = 36/75 (48%)
 Frame = -1

Query: 502 RKSPTPNLGTSAYSLDSEAIEPLTTSVRNLMEPFKIEKEENRRPFFKRLMSCLVMRSKIS 323
           R+ P P+   + +  DSEA+  + T+ +   +  K ++  +  P F+ L      + + S
Sbjct: 316 RREPGPSTPLTIHRRDSEAVHKIVTARKKGEQDSKKKRSASFLPSFRDL------KHRFS 369

Query: 322 QIKIPTNPSPLPMET 278
            +K   +PSP  + T
Sbjct: 370 NMKRTKSPSPERLTT 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,835,591
Number of Sequences: 27780
Number of extensions: 255563
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)