Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l11
         (719 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC010367-1|AAH10367.1|  346|Homo sapiens chromosome 4 open readi...   124   3e-28
AK000541-1|BAA91241.1|  346|Homo sapiens protein ( Homo sapiens ...   124   3e-28

>BC010367-1|AAH10367.1|  346|Homo sapiens chromosome 4 open reading
           frame 27 protein.
          Length = 346

 Score =  124 bits (299), Expect = 3e-28
 Identities = 72/199 (36%), Positives = 111/199 (55%), Gaps = 6/199 (3%)
 Frame = -2

Query: 640 PVFLASNDSAKDCQIKPLADNIFGAVYLHLKNENKSPFTALAC---KKLMETIKKYADEH 470
           PV++  N++ K+C I P  DN+F AV L L  + K           K + E + + A E 
Sbjct: 140 PVYVGINEAKKNCIIVPNGDNVFAAVKLFLTKKLKEITDKKKINLLKNIDEKLTEAAREL 199

Query: 469 NFSLNP--YDMKKRKSTILTNSFHRAGIVVPYNKKTQLGYRPLVENDVNLKKLFDKLQAA 296
            +SL      MK+R   ++T +FH AG+VVP +K   +GYR L E D +LK++   +  A
Sbjct: 200 GYSLEQRTVKMKQRDKKVVTKTFHGAGLVVPVDKN-DVGYRELPETDADLKRICKTIVEA 258

Query: 295 KTQSEKDNLLSDLQPIITYASIAMDECDFGTGVEMGINLFCSGLKELESNVLGCICP-AY 119
            +  E+    + +Q ++T+   A DECD+G G+E+G++LFC G       V G + P AY
Sbjct: 259 ASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCYG-SHYFHKVAGQLLPLAY 317

Query: 118 NLLNRGEFSKIIQAHMKYR 62
           NLL R  F++II+ H+  R
Sbjct: 318 NLLKRNLFAEIIEEHLANR 336


>AK000541-1|BAA91241.1|  346|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20534 fis, clone KAT10950. ).
          Length = 346

 Score =  124 bits (299), Expect = 3e-28
 Identities = 72/199 (36%), Positives = 111/199 (55%), Gaps = 6/199 (3%)
 Frame = -2

Query: 640 PVFLASNDSAKDCQIKPLADNIFGAVYLHLKNENKSPFTALAC---KKLMETIKKYADEH 470
           PV++  N++ K+C I P  DN+F AV L L  + K           K + E + + A E 
Sbjct: 140 PVYVGINEAKKNCIIVPNGDNVFAAVKLFLTKKLKEITDKKKINLLKNIDEKLTEAAREL 199

Query: 469 NFSLNP--YDMKKRKSTILTNSFHRAGIVVPYNKKTQLGYRPLVENDVNLKKLFDKLQAA 296
            +SL      MK+R   ++T +FH AG+VVP +K   +GYR L E D +LK++   +  A
Sbjct: 200 GYSLEQRTVKMKQRDKKVVTKTFHGAGLVVPVDKN-DVGYRELPETDADLKRICKTIVEA 258

Query: 295 KTQSEKDNLLSDLQPIITYASIAMDECDFGTGVEMGINLFCSGLKELESNVLGCICP-AY 119
            +  E+    + +Q ++T+   A DECD+G G+E+G++LFC G       V G + P AY
Sbjct: 259 ASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCYG-SHYFHKVAGQLLPLAY 317

Query: 118 NLLNRGEFSKIIQAHMKYR 62
           NLL R  F++II+ H+  R
Sbjct: 318 NLLKRNLFAEIIEEHLANR 336


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,631,909
Number of Sequences: 237096
Number of extensions: 2337833
Number of successful extensions: 4282
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4278
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)