Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14l10
(389 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 33 0.012
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 29 0.25
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 28 0.44
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 0.59
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 27 0.77
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f... 26 1.8
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 26 2.4
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 2.4
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 25 4.1
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 4.1
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 25 4.1
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 25 4.1
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 4.1
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 24 7.2
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 24 9.5
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 24 9.5
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 24 9.5
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 24 9.5
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 24 9.5
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 24 9.5
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 24 9.5
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 33.5 bits (73), Expect = 0.012
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = -2
Query: 226 TTPKINFSDTSQVSEGTEEGSATSTLPTTRKTIEKELRSQNTVPSRNMQRGVLDLLLPAY 47
TT +++F D + EG + G LP K +EK S P G+L LL+ Y
Sbjct: 983 TTLQVSFKDL--LLEGIDSGRIDRVLPFVCKVLEKASSSVIFKPPNPWLMGILKLLVELY 1040
Query: 46 RGEDFQ 29
+ DF+
Sbjct: 1041 QFADFR 1046
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 29.1 bits (62), Expect = 0.25
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = -2
Query: 328 SDEPTLSTKDDIHISGMPTQFIEFQLPTKTDMSTTTPKINFSDTSQVSEGTEEGSATSTL 149
SD P+ S + S + + P K +TT+PK+N S+ T +
Sbjct: 396 SDHPS-SQDNSSKASLVENSQTQSSTPRKPLPTTTSPKVNPEPHSESISDTRPSTPRKVP 454
Query: 148 PTTRKTIEKELRSQNTVPSRNMQRGVLDLLLP 53
P+T + +L+ N+V + + VL + P
Sbjct: 455 PSTVPKMNPKLQGGNSVTAPSTPSKVLPAMSP 486
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 28.3 bits (60), Expect = 0.44
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = -2
Query: 382 APSTVNFHDIYTNTLALLSDE-PTLSTKDDIHISGMPTQFIEFQLPTKTDMSTTTPKINF 206
A S+ F Y T + S P ST+ S T+ + P ++++T+T
Sbjct: 140 ATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTE-VTSSYPASSEVATSTSSYVA 198
Query: 205 SDTSQVSEGTE--EGSATSTLPTTRKTI 128
+S V+ +E GSATS +PT+ +I
Sbjct: 199 PVSSSVASSSEISAGSATSYVPTSSSSI 226
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.9 bits (59), Expect = 0.59
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 317 NFKHKRRYPHQWHAHAIYRVPAAYQNRHVYNYSKN 213
NF KR Y ++H Y + YQ+ YN S N
Sbjct: 297 NFSEKRHYDRYGNSHPSYNKYSHYQHGFNYNNSGN 331
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 27.5 bits (58), Expect = 0.77
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 4 FSKSVENILESLHLYKQAAVDLTPRAAYSSKEQ 102
F K ENI E L YK A ++T ++ SS E+
Sbjct: 316 FPKVAENIDEELTRYKNDASEITRKSGVSSLEE 348
>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 1.8
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 235 MSTTTPK--INFSDTSQVSEGTEEGSATSTLPTTRKTIEKELRS 110
+S T P I SD SQ+SE + T +TR+ EKEL +
Sbjct: 109 VSKTVPSNAITQSDNSQISESKSTSQSAVTTNSTRRK-EKELEA 151
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 25.8 bits (54), Expect = 2.4
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -2
Query: 373 TVNFHDI-YTNTLALLSDEPTLSTKDDIHISGMPTQFIEFQLPTKTDMSTTTPKIN 209
T +FHD+ + LA L + LS + +++++ + QF+E + + + T K+N
Sbjct: 101 TSHFHDVNHLCRLANLEMQKELSIEVNMNVTLVQKQFLEMVILHLRNFESVTDKMN 156
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.8 bits (54), Expect = 2.4
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = -2
Query: 349 TNTLALLSDEPTLSTKDDIHISGMPTQFIEFQLPTKTDMSTTTPKINFSDTSQVSEGTEE 170
T T ++ PT T + I + T + T+T T TP + T+ V T
Sbjct: 1085 TGTTTVVIQTPTTVTATETDIVTVTTGYTG----TETSTVTVTPTGTATGTTTVVINTPT 1140
Query: 169 GSATSTLPTTRKT 131
+ + LPTT T
Sbjct: 1141 TTGSEVLPTTGAT 1153
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 25.0 bits (52), Expect = 4.1
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +3
Query: 90 LEGTVFCERNSFSIVFLVVGNVEVALPSSVPSLT*EVSEKFIFGVVVDMSVLVGSW-NSI 266
L+ VFC + + ++ N + +PS V ++ F+ D+S W N
Sbjct: 10 LKKNVFCREDQIKKLSCLLFNKDCRVPSIVLYGVASTAKTFLLRTAFDLSKEENVWINLQ 69
Query: 267 NCVGMPLMWISSFVLKVG 320
+C + W ++KVG
Sbjct: 70 DCFTVAHFWY-RILIKVG 86
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.0 bits (52), Expect = 4.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 234 MSVLVGSWNSINCVGMPLMWIS 299
MS L SWN ++ V + +WIS
Sbjct: 263 MSYLRHSWNRVDFVAIVALWIS 284
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 4.1
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = -2
Query: 298 DIHISGMPTQFIEFQLPTKTDMSTTTPKINFSDTSQVSEGTEEGSATSTLPTTRKTIEKE 119
DIH + Q +E TD+ T K+N D SE ++ + K E
Sbjct: 594 DIHKDKLDQQAVEDLRSKITDLRETVAKVNAGDEGITSEDMKK-KIDEIQQLSLKVFESV 652
Query: 118 LRSQN 104
++QN
Sbjct: 653 YKNQN 657
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 4.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 108 KILFLRGICSAGC*IYCCLLIEVKT 34
K+LF+ CS+G CCL +E T
Sbjct: 7 KLLFMGTGCSSGIPNVCCLTLEKPT 31
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 4.1
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -2
Query: 274 TQFIEFQLPTKTDMST-TTPKINFSDTSQVSEGTEEGSATSTLPTTRKTIEKEL 116
T FI L + ST TP + S+ SEG E S ++T + + + L
Sbjct: 128 TPFINALLEASSTPSTYATPSRPTAQKSETSEGEPESSTSATTTSVARRTRQRL 181
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 24.2 bits (50), Expect = 7.2
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = -2
Query: 289 ISGMPTQFIEFQL-PTKTDMSTTTPKINFSDTSQVSEGTEEGSATSTLPTTRKTIEKELR 113
+S P+ Q+ P T +T ++ S ++ + + TTRKT+ L
Sbjct: 761 VSSSPSGSFTSQISPAATTTATNLDAVSLSPSTVRTGSQISDIGNDAISTTRKTVRAFLE 820
Query: 112 SQNTVPSRN 86
+ N + N
Sbjct: 821 NANPYSTNN 829
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 23.8 bits (49), Expect = 9.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 264 INCVGMPLMWISSFVLKVGSSDS 332
+ C PL S+ +LKVG +DS
Sbjct: 583 VKCSATPLHQFSTDILKVGITDS 605
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 23.8 bits (49), Expect = 9.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 145 TTRKTIEKELRSQNTVPSRNMQRG 74
TTR+T K +RSQ PS + G
Sbjct: 51 TTRRTPSKPIRSQPLTPSSSKGAG 74
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 23.8 bits (49), Expect = 9.5
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 191 LRSVGKIYFWSSCRHVGFGRQ-LELDKLRG 277
L + GK+Y W + + GR+ LE +L+G
Sbjct: 241 LTTTGKVYTWGNGQQFQLGRRMLERRRLQG 270
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 23.8 bits (49), Expect = 9.5
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -2
Query: 205 SDTSQVSEGTEEGSATSTLPTTRKTIEKELRSQNTVPSRNMQR 77
S ++V GT++GS+ S T + ++++ Q T ++ R
Sbjct: 691 SHITRVYSGTDDGSSVSIFEDTSSSTKQKIFDQPTTNDCDVMR 733
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 23.8 bits (49), Expect = 9.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 233 VYNYSKNKFFRHF 195
VYNYSK K + HF
Sbjct: 12 VYNYSKRKNYWHF 24
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 23.8 bits (49), Expect = 9.5
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -2
Query: 382 APSTVNFHDIYTNTLALLSDEPTLSTKDDIHISGMPTQFIEFQLPTKTD 236
APSTV H ++ T +L D+ TK+ + Q + L D
Sbjct: 109 APSTVQTHLRFSPTFRILDDKGNNLTKEVQKVLEAEPQIYSYNLKVLED 157
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 23.8 bits (49), Expect = 9.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -2
Query: 205 SDTSQVSEGTEEGSATSTLPTTRKT---IEKELRSQNTVPS 92
SDT+++SE TE +A S K+ EKE + +N S
Sbjct: 394 SDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKAS 434
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,658,500
Number of Sequences: 5004
Number of extensions: 33303
Number of successful extensions: 136
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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