Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l10
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0337 + 17709451-17710077,17710167-17710985                       28   3.0  
03_05_0233 - 22182565-22182897,22183025-22183193,22183287-221835...    28   3.0  
04_04_0701 + 27373057-27374013                                         27   4.0  
03_02_0249 - 6792210-6792215,6794332-6794607,6794692-6795180,679...    27   4.0  
07_01_0035 - 291576-291607,292867-292959,293420-293492                 27   5.3  
03_02_0163 - 6056959-6058989                                           27   5.3  
12_02_0339 - 17721664-17722407,17722921-17723556                       26   9.2  
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879...    26   9.2  
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689...    26   9.2  

>12_02_0337 + 17709451-17710077,17710167-17710985
          Length = 481

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 284 WHAHAIYRVPAAYQNRHVYNY 222
           W  H+++RVPAA ++ H + Y
Sbjct: 31  WSKHSVHRVPAAVKDLHPHAY 51


>03_05_0233 -
           22182565-22182897,22183025-22183193,22183287-22183537,
           22183816-22183966,22184406-22184716
          Length = 404

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 103 TVPSRNMQRGVLDLLLPAYRGEDFQECFRHF 11
           +VPS  + +  LD+++P  R  DF E +R F
Sbjct: 11  SVPSTPLLKDELDIVIPTIRNLDFLEMWRPF 41


>04_04_0701 + 27373057-27374013
          Length = 318

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 322 EPTLSTKDDIHISGMPTQFIEFQLPTKTDMSTTTPKINFSDTSQVSE-GTEEGSATST 152
           E   +  DD+ + G+  + ++ + PT    S++   ++   T+  S  GT  GS+  T
Sbjct: 222 EDDTAAADDVEVIGVANKAVKTEAPTSAYSSSSLSSMSRDTTATTSSAGTSTGSSEPT 279


>03_02_0249 -
           6792210-6792215,6794332-6794607,6794692-6795180,
           6795832-6795900,6797316-6797403,6798193-6798224,
           6799277-6799308,6799412-6799646
          Length = 408

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 250 PTKTDMSTTTPKINFSDTSQVSEGTEEGSATSTLPTTRKTI 128
           PT    S     ++  D    S GT++GS++S+ PT   +I
Sbjct: 349 PTTAFESKCRITVDDDDGGSASSGTDDGSSSSSSPTVEASI 389


>07_01_0035 - 291576-291607,292867-292959,293420-293492
          Length = 65

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 280 CH*CGYRLLCLKLVRQ 327
           CH CG R+LC K  RQ
Sbjct: 40  CHECGCRILCKKRTRQ 55


>03_02_0163 - 6056959-6058989
          Length = 676

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 148 PTTRKTIEKELRSQNTVPSRNMQRGVLDLLLPAYRGEDFQECFR 17
           P   KTI +EL SQ  VP++     +L     A  GED    +R
Sbjct: 305 PWVVKTIHRELVSQEAVPNKATYCCLLHAYTRARYGEDAMAVYR 348


>12_02_0339 - 17721664-17722407,17722921-17723556
          Length = 459

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = -1

Query: 284 WHAHAIYRVPAAYQ--NRHVY 228
           W  H+IYRVPA  +  NR  Y
Sbjct: 39  WRRHSIYRVPACIKDLNRRAY 59


>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
            23288510-23289353,23289468-23290120,23290573-23290676,
            23290898-23291000
          Length = 1724

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 24/89 (26%), Positives = 38/89 (42%)
 Frame = -2

Query: 346  NTLALLSDEPTLSTKDDIHISGMPTQFIEFQLPTKTDMSTTTPKINFSDTSQVSEGTEEG 167
            ++++L  D P    +D I   G   Q+I+    TK+ +     K+N   TSQ S+  +  
Sbjct: 925  SSISLPFDSPC---EDPIDKIGQIAQYIKESQVTKSSVENELHKVNEQVTSQASQLADAL 981

Query: 166  SATSTLPTTRKTIEKELRSQNTVPSRNMQ 80
            S+   L        KE  S  +   R MQ
Sbjct: 982  SSLKVLEDELSN-SKEYISSISEEKRQMQ 1009


>01_01_0879 +
           6896587-6896701,6896819-6897005,6897475-6897774,
           6897877-6898133,6898596-6898825,6899122-6899247,
           6900195-6900374,6901079-6901216,6901515-6901670,
           6902409-6902699,6902923-6903162
          Length = 739

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -2

Query: 316 TLSTKDDIHISGMPTQFIEFQLP----TKTDMSTTTPKIN 209
           T S K+D  I G+P + ++  +P     K++   T P+IN
Sbjct: 611 TKSLKEDFDIGGIPIRVVQRTIPRKETVKSNSRNTGPRIN 650


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,366,696
Number of Sequences: 37544
Number of extensions: 201436
Number of successful extensions: 538
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)