Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l10
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.18 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   2.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   3.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   3.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   6.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   6.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    20   8.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.18
 Identities = 23/88 (26%), Positives = 33/88 (37%)
 Frame = -2

Query: 379 PSTVNFHDIYTNTLALLSDEPTLSTKDDIHISGMPTQFIEFQLPTKTDMSTTTPKINFSD 200
           P +   + +Y   +    D    ST    H  G P   I     T T  +TTT       
Sbjct: 620 PRSTLRNKVYKLAMERERDASLSSTHSHPHEPGAPATTITTITTTTTTTTTTTT------ 673

Query: 199 TSQVSEGTEEGSATSTLPTTRKTIEKEL 116
           T+     T+  SAT+  P   +  +KEL
Sbjct: 674 TTTTPNTTQNASATTPPPQVDEVDDKEL 701


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 366 IFMTSTRTPWLCCLTN 319
           IF+     PW+C LTN
Sbjct: 228 IFVPVKPCPWICELTN 243


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/45 (22%), Positives = 19/45 (42%)
 Frame = +1

Query: 7   SKSVENILESLHLYKQAAVDLTPRAAYSSKEQYFVSVIPFQSFSS 141
           S  V N+L   H+ + +        +  ++  YF   +P  +F S
Sbjct: 82  SLQVANLLRLFHIPQISPASTAKALSDKTRFDYFARTVPPDTFQS 126


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/45 (22%), Positives = 19/45 (42%)
 Frame = +1

Query: 7   SKSVENILESLHLYKQAAVDLTPRAAYSSKEQYFVSVIPFQSFSS 141
           S  V N+L   H+ + +        +  ++  YF   +P  +F S
Sbjct: 172 SLQVANLLRLFHIPQISPASTAKALSDKTRFDYFARTVPPDTFQS 216


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = -1

Query: 290 HQWHAHAIY 264
           H WH H +Y
Sbjct: 208 HHWHWHLVY 216


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 205 SDTSQVSEGTEEGSATSTLPTTRKTI 128
           SD S  S  T+E   +STL    K +
Sbjct: 228 SDNSDYSHTTDENRHSSTLDIDHKML 253


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 363 FMTSTRTPWLCCLT 322
           F+  TR P  CC T
Sbjct: 190 FVVPTRVPATCCTT 203


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = -1

Query: 248 YQNRHVYNYSKNKFFRHF 195
           Y N +  NY+K  +++++
Sbjct: 333 YNNNNYNNYNKKLYYKNY 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,872
Number of Sequences: 438
Number of extensions: 2266
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)