Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l09
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   0.82 
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    26   1.4  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   1.4  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    26   1.9  
SPBC1685.13 |||non classical export pathway protein |Schizosacch...    25   2.5  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   2.5  
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    25   3.3  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    25   3.3  
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   3.3  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   4.4  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    24   5.8  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    24   5.8  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    24   7.6  
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    24   7.6  

>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 0.82
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 152 LVLLSWKWFSNSSFITSFLIVLFTL 226
           +++  ++WF+N SFIT ++ + F L
Sbjct: 52  VIVKFYRWFNNLSFITRWITIWFPL 76


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 279 MARNIKDNNNIDPATLLSNVKSTIKKDVIKELLEN-HFQESKTKI 148
           ++R    N   +   +   +  T+ ++V KEL+EN HF E  T I
Sbjct: 26  LSREYHKNGPYNHVVIRPLINDTLLRNVRKELMENIHFTEKVTDI 70


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 140 CGAILVLLSWKWFSNSS--FITSFLIVLFTLDNKV 238
           C A+LV++S  W + +   F+TSFL+   T+  K+
Sbjct: 434 CLALLVMVSLLWATEAIPLFVTSFLVPFMTVFLKI 468


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 252 NIDPATLLSNVKSTIKKDVIKELLE-NHFQESKTKIAPHALML 127
           N D   L  N KS   + +   LL  NHF ++ +K +PH  +L
Sbjct: 117 NKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALL 159


>SPBC1685.13 |||non classical export pathway protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 128 NIRACGAILVLLSWKWFSNSSFITSFLIVLFTLDN 232
           ++R C  +  L  + WF    ++ SF++ +F   N
Sbjct: 120 SMRRCQELKALCFFLWFMFGLYVASFIVQIFIAKN 154


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 193 KGTIRKPLPRK*NQDCPTC 137
           K TI++P+P K N+D  +C
Sbjct: 698 KSTIQRPIPIKNNEDSDSC 716


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 116 WPNVWSPRHACVQSNKHRERVLT 48
           WP   SPRHA +      +R+LT
Sbjct: 352 WPFWLSPRHAVILPVNQTDRILT 374


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -1

Query: 261 DNNNIDPATLLSNVKSTIKKDVIKELLENHFQESKTKIA 145
           DNN++ P T L+   +   KD+++ + +  F   +T+ +
Sbjct: 619 DNNSVPPLTDLAFSAAKCFKDILRAIEDAEFSVQRTQFS 657


>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 219 KSTIKKDVIKELLENHFQESKTKIAPHALMLLADVAKCLVT 97
           K T+  + + ELLE   Q +K    P  + +L D    LVT
Sbjct: 54  KLTVGLNSVNELLERCCQNAKDVTQPAVVFILHDQDSMLVT 94


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 270  NIKDNNNIDPATLLSNVKSTIKKDVIKEL 184
            N  D+N +     LSN++S I  D++  L
Sbjct: 1020 NTVDDNKVSSVEALSNIQSAIVADLLTSL 1048


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/20 (45%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
 Frame = +1

Query: 277  HCCCSISEYF--KAKYSSYK 330
            HCC ++S+Y+  +AK+ S K
Sbjct: 1175 HCCWALSQYYGLEAKFRSLK 1194


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/20 (45%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
 Frame = +1

Query: 277  HCCCSISEYF--KAKYSSYK 330
            HCC ++S+Y+  +AK+ S K
Sbjct: 1175 HCCWALSQYYGLEAKFRSLK 1194


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 274 GHCCCSISEYFKAKYSSYKI 333
           GH CC+       KY S KI
Sbjct: 242 GHACCTALAVISGKYISTKI 261


>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 47  WLEPSLCACLTARRHVSVTRHLATSAN 127
           +LEP L  CL A+   S+T    TS+N
Sbjct: 97  FLEPILILCLFAKTPTSLTLTGVTSSN 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,424,844
Number of Sequences: 5004
Number of extensions: 25864
Number of successful extensions: 89
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)