Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14l09
(345 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426... 30 0.42
05_02_0037 + 5883285-5884292 29 1.3
01_01_0529 + 3874865-3876285,3876352-3876367 29 1.3
07_01_0163 + 1149466-1150593,1150733-1150937,1151453-1151485,115... 28 2.3
05_01_0046 + 320600-320631,320694-320733,320871-320957,321282-32... 28 2.3
02_05_0372 + 28370589-28371857 28 2.3
12_01_0814 - 7483597-7483818,7484136-7484276,7484370-7484444,748... 27 3.0
01_01_0873 + 6836746-6836775,6836859-6836918,6837729-6837899,683... 27 3.0
07_03_0229 + 15506772-15508304 27 5.2
07_01_1074 - 9599465-9599545,9599632-9599690,9600070-9600143,960... 27 5.2
05_07_0028 + 27153663-27153932,27154966-27155175,27156220-271564... 27 5.2
11_06_0371 + 22774245-22774413,22774504-22774670,22775538-227756... 26 6.9
09_04_0493 - 18046553-18046990,18047061-18047180,18047290-180474... 26 6.9
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 26 6.9
02_04_0049 + 19238794-19239003,19239359-19239505,19239595-192397... 26 6.9
01_01_0250 + 2052599-2053358,2053581-2053604,2054813-2054848,205... 26 9.1
01_01_0205 + 1764034-1767601,1767934-1767944 26 9.1
>01_06_0319 -
28441082-28441102,28441630-28441701,28442568-28442627,
28442918-28443105,28444300-28444327,28444880-28444907,
28444942-28445163,28445238-28445409,28446224-28447468,
28447573-28447741,28447820-28448045,28449096-28449451,
28449530-28449724,28450655-28450864,28451729-28452004
Length = 1155
Score = 30.3 bits (65), Expect = 0.42
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 201 DVIKELLENHFQESKTKIAPHALMLLA--DVAKCLVTETCLRAVKQAQR 61
D I E +E HF + +TK+ P A ML + + L C+ +K +R
Sbjct: 405 DQIMETIEKHFCDEETKVLPQARMLFSPEKQRQLLYKSLCVMPLKLLER 453
>05_02_0037 + 5883285-5884292
Length = 335
Score = 28.7 bits (61), Expect = 1.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 131 CCWQMWPNVWSPRHAC 84
CCW P+VW PR C
Sbjct: 304 CCWPSPPSVWWPRCGC 319
>01_01_0529 + 3874865-3876285,3876352-3876367
Length = 478
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +2
Query: 71 CLTARRHVSVTRHLATSANNIRACGAILVLLSWKWFSNSSF 193
C A R+V T H N I CG + W W + ++
Sbjct: 321 CPEASRNVCATHHGIKFVNIINQCGGSFSITLWSWCEDGTW 361
>07_01_0163 +
1149466-1150593,1150733-1150937,1151453-1151485,
1152244-1153646
Length = 922
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 74 LTARRHVSVTRHLATSANNIRAC 142
L +RHVS TRH TS+++ +C
Sbjct: 791 LVVQRHVSATRHKRTSSSSSYSC 813
>05_01_0046 +
320600-320631,320694-320733,320871-320957,321282-321378,
321532-321823,321850-321990,322285-322390
Length = 264
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 80 QSNKHRERVLTKVDVEHIEKCLPQL 6
QSNK RERV + DV+ E C L
Sbjct: 136 QSNKSRERVWNESDVDEEEPCYDNL 160
>02_05_0372 + 28370589-28371857
Length = 422
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 201 DVIKELLENHFQESKTKIAPHALMLLADVAK 109
DVIK LLE E+ T+++ AL +L DV +
Sbjct: 242 DVIKSLLELLSDEASTRLSSRALDVLLDVVE 272
>12_01_0814 -
7483597-7483818,7484136-7484276,7484370-7484444,
7484706-7484882,7485530-7485685,7485781-7485864,
7486589-7486661,7487744-7487946,7488046-7488124,
7488326-7488464,7488559-7488646
Length = 478
Score = 27.5 bits (58), Expect = 3.0
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = -1
Query: 267 IKDNNNIDPATLLSNVKSTIKKDVIKELLENHFQESKTKIAPHALMLLADVAKCLVTETC 88
I + N++ P L ++VK+ ++K V + E+ + TK P L L+A A C E C
Sbjct: 179 INNQNHLVPV-LATSVKNEMQKLVAENGSESS-ESKNTKHHPLLLQLIAKEANCKPDEIC 236
>01_01_0873 +
6836746-6836775,6836859-6836918,6837729-6837899,
6838308-6838407,6838619-6838710,6838825-6839013
Length = 213
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 201 DVIKELLENHFQESKTKIAPHALMLLADVAKCLVTETC 88
D+++ +E + S K+ P+A ++ VA+ L TC
Sbjct: 39 DLLRNWIEEYSDHSFPKLRPYAPLIAGSVARSLACITC 76
>07_03_0229 + 15506772-15508304
Length = 510
Score = 26.6 bits (56), Expect = 5.2
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +2
Query: 11 GVNISQYVLHQLWLEPSLCACLTAR---RHVSVTRHLATSANNIRA-CGAILVLLSWKWF 178
GVN ++Y L ++C+CL A R SV R +AT RA GA V+ F
Sbjct: 121 GVNAAEYGDRWRRLRSNICSCLAATEALRRRSVDRLVATLELEARAGAGATGVVAPTDAF 180
Query: 179 SNSSFITSFLIVL 217
+ F SF VL
Sbjct: 181 RHGVF--SFFAVL 191
>07_01_1074 -
9599465-9599545,9599632-9599690,9600070-9600143,
9600797-9600996,9601074-9601365,9601665-9602411,
9602653-9602696,9602714-9602827,9603590-9603838,
9603922-9603927
Length = 621
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 243 PATLLSNVKSTIKKDVIKELLENHFQESKT 154
P +SN + TI+K ++E + F+ SKT
Sbjct: 249 PLVPISNFRRTIRKKKLQEFSKEEFETSKT 278
>05_07_0028 +
27153663-27153932,27154966-27155175,27156220-27156414,
27156491-27156840,27157198-27157423,27157524-27157692,
27158145-27158990,27159647-27159818,27159934-27160052,
27160117-27160155,27161033-27161157,27161250-27161309,
27161471-27161542,27161980-27162114
Length = 995
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 201 DVIKELLENHFQESKTKIAPHA 136
D I E +E HF+ +TK+ P A
Sbjct: 401 DQIMEKIERHFKNEETKVLPQA 422
>11_06_0371 +
22774245-22774413,22774504-22774670,22775538-22775631,
22775723-22775871,22775950-22776042,22776167-22776235,
22776236-22776415,22776465-22776518,22776739-22776905,
22777180-22777314,22777386-22777479,22777567-22777848
Length = 550
Score = 26.2 bits (55), Expect = 6.9
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = -1
Query: 309 FKIFRN*TTAMARNIKDNN---NIDPATLLSNVKSTIKKDVIKELLENH--FQESKTKIA 145
FK R T A+A NI+D N N+D L + ++K+V + E + + K K+
Sbjct: 74 FKWIRENTDAVAANIRDRNSAANLDLVLQLYDEYLALQKEVERLRAERNAVANKMKGKLE 133
Query: 144 PHALMLLADVAKCL 103
P L + K L
Sbjct: 134 PSVRQALVEEGKNL 147
>09_04_0493 -
18046553-18046990,18047061-18047180,18047290-18047478,
18047596-18047739,18048673-18048900,18049659-18049838,
18050304-18050399,18051096-18051262,18051356-18051773,
18052335-18052517,18053846-18053953,18054053-18054246,
18054503-18054662
Length = 874
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 32 VLHQLWLEPSLCACLTARRHVSVTRHLATSANNIRACGAILVLLSW 169
++ L L A L + T HLAT+ N+R C + +SW
Sbjct: 795 IVEDLILSEEPDAELKIMKTFEATEHLATALLNLRWCATMGSTISW 840
>07_03_0111 +
13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 29 YVLHQLWLEPSLCACLTARRHVSVTRHLATSAN 127
++LH L+++ ++ + A RHV + ++ SAN
Sbjct: 343 FLLHSLFVDVAIFRAIAAVRHVMEIKDVSASAN 375
>02_04_0049 +
19238794-19239003,19239359-19239505,19239595-19239750,
19239870-19239992,19240073-19240241,19240700-19240782,
19240917-19241018,19241104-19241192,19241317-19241407,
19241734-19241847,19242371-19242447,19242534-19242612,
19242710-19242778,19243022-19243197,19243309-19243365,
19243460-19243550,19243644-19243742,19243878-19244063
Length = 705
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +2
Query: 20 ISQYVLHQLWLEPSLCACLTARRHVSVTRHLATSANNIRACGAILVLLSWKWFSN 184
+ +Y + + P+L L VTRH S + + G + +W+WF N
Sbjct: 404 VDKYKVTIFYTAPTLVRSLMRDGTEYVTRHSRKSLRVLGSVGEPINPSAWRWFYN 458
>01_01_0250 +
2052599-2053358,2053581-2053604,2054813-2054848,
2055047-2056284
Length = 685
Score = 25.8 bits (54), Expect = 9.1
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 44 LWLEPSLCACLTARRHVSVTRHLATSANNIRACGAILVLLSWKWFSNSS 190
L L P L ACL A RH + A ++ R CG + + + W +SS
Sbjct: 6 LLLLPFLAACLLAPRHAA---EAAVTSCAPRRCGNVTIAYPF-WLPDSS 50
>01_01_0205 + 1764034-1767601,1767934-1767944
Length = 1192
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 102 PDIWPHLPTT*EHVGQSWFYFLGSGF 179
P PH+ ++ EHV F F+G GF
Sbjct: 1158 PSAEPHVESSSEHVDIVMFLFVGVGF 1183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,823,949
Number of Sequences: 37544
Number of extensions: 157767
Number of successful extensions: 460
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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