Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l09
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53149-1|AAD31546.1|  328|Caenorhabditis elegans Prion-like-(q/n...    27   4.8  
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo...    26   6.3  
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo...    26   6.3  
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo...    26   6.3  
AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    26   8.3  
AC087079-10|AAK27873.2|  342|Caenorhabditis elegans Hypothetical...    26   8.3  

>U53149-1|AAD31546.1|  328|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 16
           protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 31  CSTSTLVRTLSLCLFDCTQACLGDQTFGH-ICQQ 129
           CS S+   + S C+  C + C G  T  +  CQQ
Sbjct: 192 CSPSSQTSSYSKCVSQCAEQCSGSNTSNNQQCQQ 225


>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-5 protein.
          Length = 2238

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -1

Query: 270 NIKDNNNIDPATLLSNVKSTIKKDVIKELL 181
           N KDNN    ATLLSN+ S   + + KELL
Sbjct: 630 NAKDNNG---ATLLSNLLSYADETMHKELL 656


>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
           metabolism enzymeprotein 5, isoform a protein.
          Length = 2276

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -1

Query: 270 NIKDNNNIDPATLLSNVKSTIKKDVIKELL 181
           N KDNN    ATLLSN+ S   + + KELL
Sbjct: 630 NAKDNNG---ATLLSNLLSYADETMHKELL 656


>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
           metabolism enzymeprotein 5, isoform b protein.
          Length = 2238

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -1

Query: 270 NIKDNNNIDPATLLSNVKSTIKKDVIKELL 181
           N KDNN    ATLLSN+ S   + + KELL
Sbjct: 630 NAKDNNG---ATLLSNLLSYADETMHKELL 656


>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -1

Query: 258 NNNIDPATLLSNVKSTIKKDVIKELLENHFQESKTKIAPHALMLLADVAKCLVTETC 88
           +N     TL S+  ST++K  +KEL+       K   A  +  L   ++K ++  TC
Sbjct: 227 HNETTSITLPSSFNSTVRKLTLKELMTTRDTMPKITTAEPS-SLTTSLSKTVIQGTC 282


>AC087079-10|AAK27873.2|  342|Caenorhabditis elegans Hypothetical
           protein Y37E3.10 protein.
          Length = 342

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -1

Query: 201 DVIKELLENHFQESKTKIAPHALMLLADVAKCLVTETCLRAVKQAQREGSNQS 43
           D+  ++ E   ++ + K+ P A+ + AD+         + AVK A   G N S
Sbjct: 163 DISADIKEKLLEDIRKKLTPQAVKIRADIEVSCFDYDGIDAVKAALIAGKNCS 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,965,959
Number of Sequences: 27780
Number of extensions: 151366
Number of successful extensions: 436
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)