Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l08
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    26   4.4  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   4.4  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   5.8  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    25   7.7  

>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = -3

Query: 335 LPLEEYDEKVPGIQAIDEERMGDIISLVDSIQEDYVPPIPL--KYKN--KEPEPLEAKIA 168
           + +E   EKV  +QA+ +E+   I  L  S+  +   P+P   K  N   E E L ++I+
Sbjct: 331 IEIEVLREKVEKLQALSDEKDFYISKLEKSLDRNDTTPVPSDEKLSNYAAEKENLVSRIS 390

Query: 167 NLDSPTVSVT 138
            L+     +T
Sbjct: 391 ELEHTIEQLT 400


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = -3

Query: 551 MADVFTKNWNYL---PVTTQFFIHAF 483
           MAD++TK+W  +   PV    FIH F
Sbjct: 1   MADLYTKDWTDVKDKPVARVVFIHGF 26


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -3

Query: 362 DGREIIHDVLPLEEYDEKVPGIQAIDEERMGDIISLVDSIQE 237
           D  +IIHD   L +Y+  +  +QA+  +++ D++    S++E
Sbjct: 623 DALQIIHDSQGLLDYESSILCLQAVSWKQVTDLLYSHLSLKE 664


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 314 EKVPGIQAIDEER--MGDIISLVDSIQEDYVPP 222
           EK   +  +  E   +G+++  + +I EDY PP
Sbjct: 267 EKAKAVSRVGNEEGAVGEVLERIFNIPEDYTPP 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,387
Number of Sequences: 5004
Number of extensions: 53356
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)