Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l08
         (685 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209075-1|BAD92312.1|  411|Homo sapiens solute carrier family 8...    32   2.2  
AK126937-1|BAC86755.1| 1127|Homo sapiens protein ( Homo sapiens ...    31   5.0  
AB023164-1|BAA76791.3| 2330|Homo sapiens KIAA0947 protein protein.     31   5.0  

>AB209075-1|BAD92312.1|  411|Homo sapiens solute carrier family 8
           (sodium/calcium exchanger), member 1 variant protein.
          Length = 411

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = -3

Query: 500 FFIHAFKVLKLKKTEPKALLLCTLSDEQLPGTKVKRKVLPVSQAHGDGREIIHDVLPL-E 324
           FF+   +   ++ +E KALLL  L    + G  V RKV      H     I+  V+ + +
Sbjct: 65  FFLEIGEPRLVEMSEKKALLLNELGGFTITGQPVFRKV------HAREHPILSTVITIAD 118

Query: 323 EYDEKVPGIQAIDEER 276
           EYD+K P     +EER
Sbjct: 119 EYDDKQPLTSKEEEER 134


>AK126937-1|BAC86755.1| 1127|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44990 fis, clone BRAWH3008559. ).
          Length = 1127

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = -3

Query: 377 SQAHGDGREIIHDVLPLEEYDEKVPGIQAIDEERMGDIISLVDSIQEDYVPPIPLKYKNK 198
           S  H    E++  + PL++  E++  ++A  EE+   +    D+ QE           + 
Sbjct: 69  SNLHHQVEEMLQKISPLQKCQEELGSLKAELEEKKSSLKLYQDTHQEYARVKEECLKSDA 128

Query: 197 EPEPLEAKIANLDSPTVSVTQ 135
           + + LEAK+  L    V  TQ
Sbjct: 129 QKKKLEAKVKKLQEAAVKQTQ 149


>AB023164-1|BAA76791.3| 2330|Homo sapiens KIAA0947 protein protein.
          Length = 2330

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = -3

Query: 377 SQAHGDGREIIHDVLPLEEYDEKVPGIQAIDEERMGDIISLVDSIQEDYVPPIPLKYKNK 198
           S  H    E++  + PL++  E++  ++A  EE+   +    D+ QE           + 
Sbjct: 133 SNLHHQVEEMLQKISPLQKCQEELGSLKAELEEKKSSLKLYQDTHQEYARVKEECLKSDA 192

Query: 197 EPEPLEAKIANLDSPTVSVTQ 135
           + + LEAK+  L    V  TQ
Sbjct: 193 QKKKLEAKVKKLQEAAVKQTQ 213


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,587,650
Number of Sequences: 237096
Number of extensions: 1890363
Number of successful extensions: 6725
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6725
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)