Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l06
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.88 
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    27   2.0  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   2.7  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    27   2.7  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    27   3.6  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    26   6.2  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   6.2  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   8.2  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.2  

>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = -3

Query: 391 KKSCSRFRRRATPSEDLTNTSTRVTGENILRRTRYMTTATFPKFKDFATTVRVKTKESPL 212
           K   S+     T +ED+ N S++    +ILR  ++ T+  FP   D   +  ++  E   
Sbjct: 244 KIKISKLGTAETQTEDVMNKSSQKENNDILR--KHKTSVKFPTNLDALNSCTMENHE--- 298

Query: 211 HRGILEMTNVRKANDEP 161
              I E+T   K ND P
Sbjct: 299 ---INELTATNKMNDGP 312


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 340 TNTSTRVTGENILRRTRYMTTATFPKFKDFATTVRVKTKE 221
           T + +  TG N LR    +  A F + +DF T V    KE
Sbjct: 29  TRSHSSYTGRNSLRNVPAVNYAAFEQGEDFETPVETPEKE 68


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -3

Query: 718  WDYELEEMAELWARQ---CQKRHDECRNTIRFNAL 623
            ++  L+ + + W ++   CQK  D   NT+RF AL
Sbjct: 1458 YENNLDSLKKTWRKRLEGCQKNVDVWHNTLRFRAL 1492


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 602 GTHVHVLKCIKPNSIPAFVVTFLT 673
           G  +   + ++PN IP F+VTF T
Sbjct: 344 GVDIMSQRLLQPNDIPVFIVTFRT 367


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 19  SSTKPCESDPRIA-SPVGSYCMTDRLRKSGTH 111
           +ST P  +D RI  SP+GS    ++L K GT+
Sbjct: 60  NSTNPFLADTRIENSPLGSESKANQLNKQGTN 91


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 420 PRRQVDAQAAVEYQ*ELHPPGALQLPCLND 509
           P  QVD Q   +YQ E++   A+ LP  +D
Sbjct: 184 PEVQVDQQLLAQYQQEMNEAAAMPLPDEDD 213


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 495 PCLNDHTCSDCSTRDPENHAPTASANN*ASVTLGTTGRTS 614
           P  +  + S  +T  P N+  + +AN  +S+T  +TG+TS
Sbjct: 255 PPASSASTSPRNTPTPSNNGTSINANVTSSLTSNSTGKTS 294


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 189 RTYVKQMMNRKSSHSRSVTTAR 124
           R+Y++ + NRK+S SR V   R
Sbjct: 21  RSYIRNLSNRKTSISRKVPITR 42


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 156 SSHSRSVTTARPGTSMGTRFTKP 88
           +SH+ + TT  P TSM T  T P
Sbjct: 75  TSHNSTTTTVPPTTSMNTTTTVP 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,166
Number of Sequences: 5004
Number of extensions: 63550
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)